KEGG   Tetragenococcus halophilus NBRC 12172: TEH_17690
Entry
TEH_17690         CDS       T01640                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
thl  Tetragenococcus halophilus NBRC 12172
Pathway
thl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TEH_17690 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thl03019]
    TEH_17690 (rnr)
   03016 Transfer RNA biogenesis [BR:thl03016]
    TEH_17690 (rnr)
Enzymes [BR:thl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     TEH_17690 (rnr)
Messenger RNA biogenesis [BR:thl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TEH_17690 (rnr)
Transfer RNA biogenesis [BR:thl03016]
 Prokaryotic type
  tRNA degradation factors
   TEH_17690 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB RNase_II_C_S1 CcmE
Other DBs
NCBI-GeneID: 11261474
NCBI-ProteinID: BAK95096
Position
complement(1801267..1803585)
AA seq 772 aa
MKETIKTKVLHFMENSSKKSFSMEEIAENLGLGKSDDFKALVQTVATMEREQLVVFNKKG
KIKLPPKQVLVEGTFRANERGFGFVTIDPEEDDVYIAKENTAYAMDGDLVAIDITKLSDP
ADELGAEGRIVEVRQRNLTQIVGEFHLFSEDEIADTDLYGVISPKDKKLSGFKVFISATG
IRPVEGNIVIAEITHYPEKGYEDSLEGIVKNIIGHKDEPGMDILTVLAAHDVPTEFPEEV
IEQAEQVPDSIDPKDYSDRKDRQDQMIVTIDSEEAKDLDDAVSVKKLENGHFFLAVHIAD
VSYYVTENSPLDKEALKRGTSVYLTDRVVPMLPQRLSNGICSLNPQVPRLAMSCEMEIDE
QGSVVSYDIFPSVIKTNERMSYTAVNEILEDENPETMARYKKLVPMFQAMKELHECLETM
RDKRGALTFEDNEAQVVVDENGHPLDIILRQRGIGERIIESFMLCANETIAKHYQQANLP
FIYRIHEEPKEEKLQQFFDFAATLGILVKSKKGSISPKDLQKVVEDAAERPESKVINTML
LRSMQQARYSEENVGHYGLAAEHYTHFTSPIRRYPDLLVHRLIRSYSEDKSEKKQEKWAE
KIPEIAQHSSDMERRAVECERDVDSMKKAEFMQDHIDEEFEGVISSVVKFGFFVELPNTI
EGLIHVSDLQNDYFQFVESQLALVGEHTNQTFKIGQQVKVRVTKADPDTREVDFELVDAQ
EVTPVQTNKQQNHKQAKKNKEDTSKKKKSKKAKNKEKKPFYKDVPKGAKKKK
NT seq 2319 nt   +upstreamnt  +downstreamnt
atgaaagagacaataaagactaaggttttgcattttatggaaaatagttctaaaaaaagt
ttttcaatggaagaaattgcagaaaacctaggattaggtaaaagcgatgatttcaaagct
ttagtgcaaaccgtagcaacaatggaaagagaacaattagttgttttcaataaaaaagga
aaaataaaattgccgcccaagcaggtactagtggaaggaacattccgagcgaatgagcgt
ggttttggttttgtgacgattgatccagaagaagatgacgtttatattgctaaagaaaac
actgcttatgctatggatggggatttggtggctattgatattactaaactgtcagatcct
gctgatgaactgggagctgaaggtcgtattgtggaagtacgtcaaagaaatctcacacaa
atcgttggagagttccatttgttttctgaagatgaaattgcagatactgatttgtatggg
gtaatttcacctaaagataaaaaactttccggttttaaagtatttatttccgctacaggc
atccgtccggtagaaggaaatattgtgattgctgagatcactcattatcctgaaaaaggt
tatgaagatagtttagagggaatcgtaaaaaatattatcggtcataaagatgagccaggt
atggatatcttaacagttttagcagctcatgatgtgcctacagagttccctgaagaagtt
attgagcaagctgaacaagttccagactcgattgaccctaaagattattctgatcgaaaa
gatagacaggatcaaatgattgtaacgatcgatagtgaagaagccaaagatttggatgat
gcagtttcagtaaaaaaattagaaaatggccatttctttttagctgtgcatatcgcagat
gtttcttactatgttaccgaaaatagtccattagataaagaagccttaaaacgtggcaca
agtgtttatctaaccgatcgtgttgttcctatgttgccgcaacgcttgtctaatggaatt
tgttcgttaaatcctcaagtcccacgacttgccatgagttgtgagatggaaattgatgaa
caaggaagtgtcgtttcttatgatatatttccaagtgtcattaaaaccaatgaacgtatg
tcttacacagcggttaatgaaattttggaagatgaaaatccagaaacaatggcgcgctat
aagaaattagtaccgatgtttcaagcgatgaaagaattacatgagtgcttagaaacgatg
cgtgataagcggggagctttaacttttgaagataacgaagcacaagtcgttgttgatgaa
aatggccaccctctagatattattttaagacaaagaggcataggcgaacgtattattgag
tcctttatgctttgtgccaatgaaacgatcgctaaacattatcaacaagcaaatttacct
tttatttatcgtattcatgaagagccaaaagaagaaaagctgcagcagttttttgatttt
gcagcgactttaggaattttagttaagagtaaaaagggttcgatcagccctaaagattta
caaaaggtagtggaagatgcggctgaaagaccagaaagtaaagttattaatacgatgttg
ttacgtagtatgcaacaagcacgttattcagaagaaaatgtaggtcactacggtttagca
gcagaacattatacacattttacttctcctattcgtcgttatcctgatttgttggttcat
cgtttgattcgttcatacagtgaagataaatcagaaaagaaacaagagaaatgggcggaa
aaaattcctgagatcgcacagcatagctctgatatggagcgacgtgctgtagagtgtgaa
cgcgatgttgattcgatgaaaaaagctgaatttatgcaagatcatatcgatgaagaattt
gaaggtgtcattagttctgttgttaaatttggcttttttgttgaattacctaatacaata
gaaggcttgattcatgtaagtgatttacaaaacgattattttcaatttgttgaaagtcag
cttgctttggttggagaacatacaaaccaaacttttaaaatcggtcaacaagtaaaggta
cgggtgacaaaggcagatcctgatactagagaagtggattttgaattggtagatgcgcaa
gaagttacgcccgttcaaacgaataaacaacaaaatcataaacaagctaagaaaaataag
gaagatacaagcaaaaagaaaaaaagcaaaaaagctaagaataaggaaaaaaaacctttc
tataaagatgttccaaaaggggcaaagaaaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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