KEGG   Thioclava nitratireducens: BMG03_11235
Entry
BMG03_11235       CDS       T04697                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
thw  Thioclava nitratireducens
Pathway
thw03030  DNA replication
thw03410  Base excision repair
thw03420  Nucleotide excision repair
thw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:thw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BMG03_11235
   03410 Base excision repair
    BMG03_11235
   03420 Nucleotide excision repair
    BMG03_11235
   03430 Mismatch repair
    BMG03_11235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thw03032]
    BMG03_11235
   03400 DNA repair and recombination proteins [BR:thw03400]
    BMG03_11235
Enzymes [BR:thw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BMG03_11235
DNA replication proteins [BR:thw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BMG03_11235
DNA repair and recombination proteins [BR:thw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BMG03_11235
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BMG03_11235
   MMR (mismatch excision repair)
    DNA ligase
     BMG03_11235
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BMG03_11235
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT zf-NADH-PPase SHOCT
Other DBs
NCBI-ProteinID: AQS48307
Position
complement(2349845..2351968)
AA seq 707 aa
MSEPSRTEIDALSEAEARAEMPSLIAKIEAANTAYHTHDAPEISDAEYDALKQRLAAIEA
KFPALKSEQSPTEQVGGQLAEGFGKITHAIRMMSLANAFSDEEVTEFDESVRSFLGLKSD
AKLNYTAEPKIDGLSLSIRYEKGKLIHAATRGDGAVGENVTENARTIDDIPTSIADAPDV
LEVRGEVYMSHADFEALNSRNEAAGEKRFANPRNAAAGSLRQLDPKVTASRPLKFFAYAW
GELSAPLAETQIEAIARLQSLGFQTNPLTELCDGPADMLAHYREIEAKRATLGYDIDGVV
YKVNDLALQRRLGFRSTTPRWAIAHKFPAELAWTQLEGIDIQVGRTGALSPVARLTPVTV
GGVVVSNATLHNEDYIAGRDSKGAEIRGGKDIRVGDWVQVYRAGDVIPKIADVDLARRPE
DAVPYDFPTHCPRCGSEAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGAK
QVEQFYEDGWIKEPADIFTLEERYGQGIQQLKNREGWGEKSARNLFAAIAEKRRIPLQRL
IFALGIRHVGETSAGMLATHYGTWDAFETAMTQADCGQGPEWDDLISIDGVGETLATSVV
TTFQQEAERASIDRLTAHLSVEEAEKPKSDSPVSGLTVVFTGTLEKMTRAEAKARAEALG
AKVSGSVSAKTDLLVAGPGAGSKAKKAAELNIRVIDEDEWIALAGGA
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgtccgagccaagccgcaccgagatcgacgcgctgagcgaggccgaggcccgcgcagaa
atgcccagcctgatcgccaagatcgaggcggccaataccgcctatcatactcatgatgcg
cccgagatttcggatgcggaatatgacgcgctcaagcaacgcctcgcagcgatcgaggcg
aaatttcccgcgttgaaatccgagcaatcgcccaccgaacaggttggcggccaactcgcg
gaaggcttcggcaagatcacccatgcgatccgcatgatgagcctcgccaatgccttttct
gacgaggaggtgaccgagttcgacgaaagcgtccgcagcttcctcggtctgaaatccgac
gcaaagctgaactacacggccgagccgaagatcgacgggctgtcgctctcgatccgctac
gagaagggcaagctgatccatgccgccacgcgcggcgacggtgcggtcggtgagaacgtg
accgagaacgcacgcaccatcgacgacattccgacctcgatcgcggatgcgcccgacgtg
ctggaagtgcgcggcgaagtctatatgagccatgccgatttcgaggcgctcaacagccgc
aacgaggccgcaggcgaaaagcgtttcgccaatccgcgcaacgccgctgctggatccttg
cgccaactcgacccgaaagtgaccgcgtcgcgccctctgaagttctttgcttatgcctgg
ggggagctttccgcgccgctggccgagacccagatcgaggccatcgcgcggctgcaatcc
ctcggcttccagaccaacccgctgaccgagctttgcgacggacctgctgacatgctcgcc
cattaccgcgagatcgaggcaaagcgcgccacgctcggctacgatatcgacggcgtcgtc
tacaaggtaaacgacctcgcgctgcagcgccgcctcggcttccgctcgaccacgccgcgt
tgggcgatcgcgcataaattccccgccgagcttgcctggacgcagctcgaagggatcgac
attcaggtcggtcgcaccggcgcgctctcgccggtcgcgcggctgacgccggtgacggtg
ggcggcgtggtcgtctcgaacgcgacgctgcataacgaggattacatcgccgggcgcgat
tccaagggcgcggaaattcgcggcggcaaggatatccgcgtcggcgactgggtgcaggtc
tatcgcgcgggggacgtgatcccgaagatcgccgatgtcgatctcgcgcgccgccccgaa
gatgcggtgccctacgactttccgacccattgccctcgctgcggatccgaggcgatccgc
gaagagggcgatgcggtgcgccgctgcaccggcgggctgatctgccccgcgcaagcggtc
gaaaagctgaaacatttcgtctctcgcgcggctttcgacatcgaaggtctcggcgcgaaa
caggtcgagcaattctacgaggatggctggatcaaggaacctgccgacatcttcacgctg
gaagagcgctacgggcagggcatccagcagctcaagaaccgcgagggctggggagagaaa
tcggcgcgcaacctctttgccgccatcgcagagaaacgcaggattccgctgcaacgcctg
atcttcgcgctcggcatccgtcatgtcggtgagacgagcgcagggatgcttgccacacat
tacggcacatgggacgcgttcgagaccgcgatgacgcaggcagactgcggccagggcccg
gaatgggacgatctgatctcgatcgacggcgtcggcgagacactcgcgacctcggtcgtg
acgacgttccagcaagaggccgagcgcgcctcgatcgaccgtcttaccgcacatctgagt
gtcgaggaggccgagaagccgaaatccgacagtccggtttcgggcctcaccgtcgttttc
accggcacgctggagaagatgacccgggccgaggcgaaggcgcgggcggaggcgcttggc
gcgaaggtctcggggtccgtcagcgccaagaccgacctgctcgtcgcggggccgggcgct
ggatcgaaagccaagaaagcggccgagttgaacatccgcgtcatcgacgaggatgaatgg
atcgcgctcgcggggggcgcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (56)   

Download RDF
DBGET integrated database retrieval system