KEGG   Thiomonas intermedia: Tint_2660
Entry
Tint_2660         CDS       T01227                                 
Name
(GenBank) exodeoxyribonuclease V, beta subunit
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
tin  Thiomonas intermedia
Pathway
tin03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Tint_2660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tin03400]
    Tint_2660
Enzymes [BR:tin01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Tint_2660
DNA repair and recombination proteins [BR:tin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Tint_2660
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 Viral_helicase1 AAA_12 AAA_25 DUF294 AAA_11 HBS1_N Terminase_6N
Other DBs
NCBI-ProteinID: ADG32001
UniProt: D5X684
Position
2829256..2832864
AA seq 1202 aa
MTAIPEPLDALTLPLQGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQI
LVMTFTRAATRELAERIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWR
LAMAAQAMDDAAVFTIDAWCQRMLREHAFDSGHSFDEDLLADEGELTTQAVHDFWRQQVY
PLSGAALDGVLQVWPDVGALEGEVKSRLRAAQAGAPPVADKDDSLLDLWQRLGEPQQAQV
RTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDALQAWLDDPAQQQPGL
DDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADLVPELQTYAAAQVDAR
LRVLKAASGQFSFHDQLERLDAALAGPQGERLRARILEQYPVALIDEFQDTSALQFSVFD
RLYSITTAQTTHSAVLLIGDPKQSIYAFRGADIASYLRARQATQGRHSALQTNYRSTAEV
VHSVNQLFERREQSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTC
AVHQALESKRDARERFAAHSAARIVSLLNDTQVGFRQADGGFARLRQSDIAVLVRDGDEA
RAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLGAT
IAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPARWLSEEDGERRL
TNVLHLAELLQTASGALDGEQALIRWLQEQMAGQSTEEQVVRLESEADLVRVVTIHKSKG
LEYPLVFLPFATAFKEAKDGADDRERLREDLRLLYVALTRARHALWVGIAALKVGKGSVC
MLHRSAIGYLLGGDTPCEGAAIPGLLRETFGDSPAVQIVDAAQEAELQRLQAAHPAQALI
EPPNYHAQFERNWSIGSFSALVRDLTPRSTQQPALQAALQDELWATEPSMEQPSPATLQP
SAARHRFPRGALVGKFVHEQLAWLGENGFALSAQQTQDNLLQRCARQGWDAPRSADLLEW
LSEVLATPLPPLGAALPEIDTLLAEMEFWLPVDRARAAEIDALCQQHILPGRARPELTER
TLHGMVMGFADLVFHHAGRYWVLDYKSNVLGTDDADYTQQVLEAAVLEHRYDVQCALYML
ALHRLLRARLRTAYDPQTQLGGAIDLFLRGVRGPRSGCVHIPPDGVLLDALDALFAKREE
LA
NT seq 3609 nt   +upstreamnt  +downstreamnt
atgactgccatcccggaacccctcgatgccctgaccttgcccctgcagggcagccgcctg
atcgaagccagcgcgggcaccggcaagacctggaccatcgccgcgctctacctgcgcctg
gtgctgggccacggcgacgaagctagcgcgtttgcccgcccgctgagtcccgagcagatt
ctggtgatgaccttcacccgcgccgccacgcgcgaactggccgagcgcattcgggcgcgt
ctggtggaggcggcgcagtgcttccagggcaccattgcacccaaggcggacgatgaattt
ctgctgcgcctgctggacagctatccgccgggaagtgcgcggcagaccgccgcctggcgc
ctggcgatggcggcgcaggcgatggatgacgcggccgtgttcaccatcgacgcctggtgc
cagcgcatgctgcgcgaacacgccttcgacagcggtcattccttcgacgaagacctgctg
gccgacgaaggcgaactcaccacgcaggccgtgcacgacttctggcggcagcaggtctat
ccgctttctggcgcggcgctggacggtgtgctccaggtgtggccggacgtcggcgcgctg
gagggtgaagtgaaatcgcggctacgcgcagcccaggccggggcgccgccggtcgctgac
aaggacgactcgctgctcgacctctggcagcggctgggcgagccgcagcaggcgcaggtg
cgcacgctcaaggcgcaatgggccgagcgtgtcgcgagcatgcggcaatggctgtgcgcg
ctggtgcagtccgaggtcaacccgctgagcaagaacaaatatggtttgaaaagcgtttgc
ggctggtttgacgcgctgcaagcctggctggatgaccccgcgcagcagcagcccggtctc
gacgataaagcttgggccaagctcacgcccgacggcttgcgcgctggctgcaaccagggc
aagcaggtggagccgccagcggtgttcaacgaggtcgagatgctgcgcgcggcgctggcc
gatctggcggacctcgttcccgagctgcagacctatgcggccgctcaggtcgatgctcgg
ctgcgggtactcaaggcggccagcggccaattcagctttcacgaccagctcgaacgtctc
gatgcagcgctggccgggccgcagggcgagcggctgcgcgcgcgcattctggagcaatat
cccgttgcgctcatcgatgaatttcaggacacctcggcgctgcagttcagcgtgttcgat
cgcctctacagcatcactacggcgcagaccacgcacagcgccgtgctgctcatcggcgac
cccaagcagtcgatctacgcctttcgcggcgccgatatcgccagctatctgcgcgcgcgg
caggccacgcagggacggcactcggcgctgcagaccaactaccgctcgaccgcggaggtg
gtgcacagcgtcaaccaactgttcgagcggcgcgaacagtccgcgggcgcgggcgctttt
ctgtaccgggacgatgaggcgcctgatgcggacaaccccgtgcccttcatcgcggtcggt
gcgcgcgggcgggccgagcaattgatttgctccgaagggccggtgcacgcgctgacctgc
gccgtgcatcaggcgctggaatccaaacgcgatgcccgcgagcggtttgctgcgcattcg
gctgcgcgcatcgtcagtctgctcaacgatacgcaggtcggcttccgtcaggccgacggc
ggctttgcgcgtctgcgccagtctgacatcgccgtgctggtccgcgatggcgacgaggct
cgcgccatgcgccgcgcgcttcagcgccggggcgtggcttcggtttatctgtccgatcgc
gattcggtgtttgcctcgccggaggccgccgacctgctgcgctggctgcgtgccgtggct
gagccgcgcgacgggcgtctggcccgcgccgcattcgccgccccgacactgggggcaacg
atagccgagctggccgcgctggctaccgatgacgacgtgttcgacaaccggctggctttg
ctggccgagctgcaggctatctggctgcgtcagggggtattgcccatgctgcgccagacg
ctgcaccggctcgatctgcccgcccgctggttgagcgaggaagacggcgagcgccgcctg
accaatgtgctgcatctggccgaactgctgcagaccgccagcggcgcgctcgacggcgag
caggcgctgattcgctggctgcaggagcaaatggcgggccagtccaccgaagaacaggtg
gtgcggctggaaagcgaggccgatctggtgcgcgtggtcaccatccacaagtccaagggg
ctggaatatccgctggtgtttctgccgtttgccaccgcgttcaaagaggcgaaggacggc
gccgacgaccgcgagcgcctgcgcgaagacctgcggctgctctatgtggcgctgacccgc
gcgcgacatgcgctgtgggtcggcatcgccgcgctgaaagtcggcaaagggtcggtctgc
atgctgcatcgcagcgccatcggctatctgctgggaggcgatacgccgtgcgagggcgcc
gccattcccggcctgctgcgcgagacttttggcgacagtccggcggtgcagatcgtcgat
gcggcgcaggaggccgagcttcagcgcttgcaggctgcccaccccgcccaggccttgatc
gagccgcccaactatcacgcccagttcgagcgcaactggagcatcggcagcttctccgcg
ctggtgcgcgatctcaccccacgctcgacccagcaacccgctttgcaagcggccctgcaa
gacgaactgtgggcgaccgaaccgagcatggaacagccctcacctgcaactctccagccg
tctgccgcgcgccatcgctttccgcgtggcgcgctggtgggcaagttcgtgcatgaacaa
ctggcctggctgggcgagaacggtttcgccctttcagcccaacaaacgcaggacaacctg
ttgcaacgctgcgcccggcagggttgggatgcgccgcgttcggccgatttgctggagtgg
ttgagcgaagtgctggccacgcccttgccgccgctgggcgcggcgctgcccgagatcgac
acgctactggcggaaatggaattctggctgccggtcgatcgcgcgcgcgcggccgaaatc
gacgccctgtgccagcagcacatcctgccgggccgcgcccgccctgagttgaccgagcgc
accctgcacggcatggtgatgggattcgccgatctggtgttccaccacgcgggccgctac
tgggtgctcgactacaagagcaatgtcctcggcacggacgacgccgactatacgcagcag
gtgctggaggccgccgtgctcgaacaccgctatgacgtgcaatgcgcgctctacatgctg
gccttgcatcgcctgctgcgggcccggctgcgcacggcctacgacccgcagacgcagctt
ggcggcgcgattgatctgttcctgcgcggggttcgcgggccgcggtcgggctgcgtgcac
attccgcccgacggggtcttgctcgacgcgctcgacgccctctttgccaagcgcgaggag
ctcgcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system