KEGG   Thermincola potens: TherJR_2912
Entry
TherJR_2912       CDS       T01226                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
tjr  Thermincola potens
Pathway
tjr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tjr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TherJR_2912
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tjr03021]
    TherJR_2912
   03019 Messenger RNA biogenesis [BR:tjr03019]
    TherJR_2912
Transcription machinery [BR:tjr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TherJR_2912
Messenger RNA biogenesis [BR:tjr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TherJR_2912
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT ATPase_2 AAA AAA_22 Spore_III_AA AAA_25
Other DBs
NCBI-ProteinID: ADG83744
UniProt: D5XDJ8
Position
complement(3046229..3047470)
AA seq 413 aa
MNEAMLEAMTMVELYKIAKELEITGYYKLRKKELIFEIMKHKTKNDEVLTAQGVLEILPD
GYGFLRPFGYLPSQDDIYVSPSQIRRFDLMTGDLISGQVRPPKDNERYFALLRVETVNGF
DAEAAGDRVHFDALTPIYPTERITLETSPDLLSTRLIDLIAPLGKGQRGLIVSPPKAGKT
VLLKQIANSITKNYPDIHLMVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAENHVKVSEM
VLERAKRLVEHKKDVVILLDSITRLARAYNLVEPPSGRTLSGGVDPSALHKPKRFFGAAR
NIEEGGSLTILATALVDTGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPAIDIKRSGT
RKEDLLLSKEELELMWGFRKSFANATNGEAIEILAESLKKTKTNKELLVRAVS
NT seq 1242 nt   +upstreamnt  +downstreamnt
atgaacgaagctatgctggaagctatgacaatggtcgaactttataaaatcgcaaaagaa
ctggaaatcaccggatattacaaacttaggaaaaaagagctcattttcgaaataatgaaa
cacaagacaaaaaacgatgaagttctaactgcgcaaggagttctggaaattttgccggac
ggctacggttttcttcgtccctttggttatttgcccagccaggatgatatctatgtatcc
ccatcacagatcaggcgatttgatttaatgacaggtgatttaatcagcggacaggtgcgg
ccgccgaaggataatgaaaggtattttgccctcctcagggtggaaacggtaaacggtttt
gatgcggaggcagcaggcgacagagtgcattttgatgctttaaccccaatttatcctacg
gaaagaattactctggaaaccagtcccgatttgttatctacccgccttatagaccttatt
gctcccctgggcaaggggcagcgggggctgatcgtatcaccgccgaaagccggtaaaacc
gttttgttaaagcaaattgccaatagcattactaaaaactatccggatattcatttaatg
gtactgcttattgacgagcggccggaagaagttacagatatgcagagatcggtgcggggt
gaagttgtcagctcaacttttgatgaacctgccgaaaaccatgtcaaagtatcggagatg
gtactggagcgggctaaacggttggtggaacataaaaaggatgtggtgattctgctcgac
agtattacccgtctggccagggcatataacctggtagagccgcccagcggtcgtacttta
tccggcggagtggatcccagcgctttacataagcccaaaaggttttttggcgctgcgcga
aatatagaggaaggcggcagcctgaccatactggccacggccctggttgataccggcagc
agaatggatgacgtgatttttgaggaatttaaaggtacgggcaatatggaattgattctg
gacaggaaattggccgagcggaggattttcccggctatagacataaaacgttccggcacc
cgtaaagaagacctgctgctgagcaaagaggaactggaattaatgtggggtttcagaaag
agctttgccaatgctacaaatggcgaagctatcgagatactggccgaaagcctgaagaaa
acgaaaaccaacaaggaactgcttgtacgcgcagtcagttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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