KEGG   Thermococcus kodakarensis: TK1738
Entry
TK1738            CDS       T00226                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tko  Thermococcus kodakarensis
Brite
KEGG Orthology (KO) [BR:tko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tko03016]
    TK1738
Enzymes [BR:tko01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     TK1738
Transfer RNA biogenesis [BR:tko03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    TK1738
SSDB
Motif
Pfam: LigT_PEase AKAP7_NLS 2_5_RNA_ligase2 DUF1045 Ribosomal_L1 STAS MreB_Mbl NIR_SIR_ferr HGD-D DUF6304
Other DBs
NCBI-ProteinID: BAD85927
UniProt: Q5JJ41
Position
1536622..1537176
AA seq 184 aa
MRAFIAIDVSDEVRDNLLRAQERIGNKAAKIKFVERENFHVTLKFLGEIDETTAEEVKRA
LAEIAKKHKKHRVRVKGIGVFPNPNYVRVIWAGIENDEGIKAIAEDVEKAMRKLGFKKEK
DFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVEAIELKKSTLTPKGPIYETVARF
ELAD
NT seq 555 nt   +upstreamnt  +downstreamnt
atgagggcgttcatagcgatagacgtcagcgacgaagttagggacaaccttctcagggcc
caggaaaggatagggaacaaggcagccaagataaagttcgtcgagagggagaactttcac
gtcacgctcaagttcctgggcgagatagacgagacgaccgccgaggaagttaagagggca
ctggcggagatagcaaagaaacacaagaaacaccgcgtcagggtgaaggggataggcgtc
ttcccgaacccgaactacgtgagggtcatctgggcgggaatagagaacgacgaggggata
aaggcgatagcggaggatgtggagaaggccatgaggaagctcggcttcaagaaggagaag
gacttcgtcgcccacatcactattggcagggtgaagttcgtcagggacaagcttgagctt
gccatggcgctgaaagacctcgccaacgaggactttggggagttcgaggtcgaggcgata
gagctgaagaagagcacgctaacgccaaagggcccgatatacgagacggttgccaggttt
gagctggccgattga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (28)   

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