KEGG   Thermovirga lienii: Tlie_0072
Entry
Tlie_0072         CDS       T01644                                 
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
  KO
K02405  RNA polymerase sigma factor FliA
Organism
tli  Thermovirga lienii
Pathway
tli02020  Two-component system
tli02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tli00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Tlie_0072
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Tlie_0072
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tli03021]
    Tlie_0072
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:tli02035]
    Tlie_0072
Transcription machinery [BR:tli03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Tlie_0072
Bacterial motility proteins [BR:tli02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    Tlie_0072
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 HTH_50 GerE KORA HTH_38 HTH_23 UPF0122 Sigma70_ECF HTH_24 Sigma70_r3 HTH_10 HTH_5 HTH_Tnp_ISL3 Phage_antitermQ HTH_28 HTH_AsnC-type SpoIIID DUF1492 MarR_2 Phage_terminase
Other DBs
NCBI-ProteinID: AER65818
UniProt: G7V5J1
Position
82112..82918
AA seq 268 aa
MPKRVQKLMDAGVSTGELWLSYKEAQSQSNAEQDLLREKLFKKFQYLVYFVVKKMPLTPP
RGLDYEDLISFGNIGLLDAIDRYDPSLGYAFQTYAVSRIRGTILDEIRKFDWFSRTGREK
VQALERAAEQQFQEEGKVTNEGLMKRLNVTEEQLDEMLKISQRSYIGYLDEELVLEDSEV
DRCDIIAGEGDSPQEVVERNEEIAKLYEALDQLSDRERKLIKMYYFEFKTFREIARELGV
SESRVSQLHKRILEKLEQKLYSVMYVEG
NT seq 807 nt   +upstreamnt  +downstreamnt
atgcctaagagagtacaaaagcttatggatgctggagtgtctacgggcgagttgtggctc
agttataaggaagcgcaaagtcaaagcaatgcagagcaggatctattgcgggagaaactc
ttcaaaaaatttcagtatttggtttatttcgtggtgaagaaaatgccccttaccccacca
agaggtttagactacgaggatttgatcagctttggcaacatagggctcttggacgccata
gacaggtacgacccctctcttggatatgcctttcagacctatgcggtttccagaataaga
ggcaccattcttgatgagataaggaaatttgactggttctccaggacgggcagggagaag
gttcaggccttggagcgcgctgcggagcaacagtttcaggaagaaggcaaggtaaccaat
gaagggctaatgaaaaggctcaacgtgaccgaagaacaactagatgagatgctcaaaata
tctcagcgatcctacataggttatctggacgaggagcttgtactggaggactctgaggta
gaccggtgtgacataatagccggcgaaggagattcccctcaggaagtggtcgagagaaac
gaggaaatagctaagctttacgaagctttggaccaactttctgatagggagcgaaagctt
ataaagatgtactatttcgagttcaaaacctttagggagatagcccgagagctcggggta
tctgaatctcgggtatcccagctacataaacgcattttggaaaaactggaacaaaaactt
tattctgtaatgtacgttgagggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (45)   

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