KEGG   Thermovirga lienii: Tlie_0282
Entry
Tlie_0282         CDS       T01644                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
  KO
K03092  RNA polymerase sigma-54 factor
Organism
tli  Thermovirga lienii
Pathway
tli02020  Two-component system
tli02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tli00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Tlie_0282
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Tlie_0282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tli03021]
    Tlie_0282
Transcription machinery [BR:tli03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Tlie_0282
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD HTH_3 HTH_IclR Sigma54_AID UPF0181
Other DBs
NCBI-ProteinID: AER66022
UniProt: G7V6R3
Position
complement(297192..298412)
AA seq 406 aa
MASNELHHELKPTLTTKLNPLPLILPSLNLLTVPAYALEEELKQRVGDNVFLGVAPPPSA
VPLSAFDGDDVNPLENIPAPTSMDEDISSQLRFIPSLEGMPDEVIDTLVQGLDSRGYISE
DTLDVLCKFAGLSKKKTLDILKDIQDSIDPPGLFARNLWECLLIQLRRKGMVGKDPWVVL
TEGKEFILKKDIRGLSKFLGWTHERTQKALEEIKKLDPHPGNFIIKNQYIVPEIEFVKEK
DTIRVRLLHENLPKLFLDTELLEHTSNQTLREQWLSAKHTLVALSIRIRTKLRISQFLAK
AQKAFLAGESTAPSPLTLKTVSRETNYHPSTILRITKTTWALSPVGTIPLEKLLSRPLRA
KPTMSVAQLRQAIKEAKPLGISDEALALKLGLPRRTITWHRNKMGM
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggcatcgaatgaactccaccacgagctgaaaccaactctaacgaccaaattaaaccct
ctacctctgatattgccatccctaaacctccttacagtgccagcttacgcccttgaggaa
gaactaaaacaaagagtaggagacaacgtctttctaggcgtagcgcctcccccctcggcc
gtgcctctcagcgcttttgatggcgatgatgtcaatccactggaaaacattcctgcccca
acgagcatggacgaggacatatcaagccagttgagattcattccgtcattggagggtatg
cctgatgaagtgatagatacccttgtccagggccttgactccagagggtacatttcagaa
gacaccttggacgtgttgtgtaaattcgcaggactaagcaaaaagaaaaccttagacatc
ctaaaggacattcaagactctatcgacccaccagggctattcgcaagaaatttatgggag
tgcctgctcatacagttgaggcgcaagggcatggtagggaaagacccttgggttgtttta
accgaaggaaaggaatttatattgaaaaaagacataagaggcctctccaagttcctcggg
tggacccatgaaagaacccaaaaagctctagaggaaatcaaaaagcttgatccacaccct
gggaatttcatcataaaaaaccagtatatagtgccagaaatagaatttgtaaaagaaaaa
gataccataagggtacgccttctccacgaaaacctgcccaagttattcttggatacagag
cttttagagcacacaagcaaccagacattgagggagcagtggctttcagcaaaacacacc
ctagtcgctctatccatacgcattagaacaaagcttagaatatcccaatttttggctaaa
gcccaaaaagccttcctggctggagaaagcaccgcaccatctcctttgactctaaaaaca
gtatcacgagaaacaaactaccacccctctacgatcctgagaataaccaagaccacctgg
gcactctctcccgttggaaccatcccgctagaaaaactcctgtcaagacccctaagggca
aaacccaccatgtcggtggcgcagttaaggcaggccataaaagaggcaaaacctctgggg
atttccgatgaagccctcgccctgaaactgggattgccccgcagaaccataacctggcac
agaaacaaaatgggcatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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