KEGG   Thermococcus litoralis: OCC_06826
Entry
OCC_06826         CDS       T02800                                 
Name
(GenBank) double-stranded DNA repair protein Rad50
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
tlt  Thermococcus litoralis
Brite
KEGG Orthology (KO) [BR:tlt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tlt03400]
    OCC_06826
DNA repair and recombination proteins [BR:tlt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     OCC_06826
    Archaeal homologous recombinant proteins
     OCC_06826
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 AAA_13 AAA_29 SMC_N AAA_15 ABC_tran NPV_P10 ATG17_like Baculo_PEP_C Spectrin ERM_helical Syntaxin_2 EzrA TACC_C SbcC_Walker_B Laminin_II DUF1664 Seryl_tRNA_N FtsK_SpoIIIE GAS HMBD WXG100 RsgA_GTPase
Other DBs
NCBI-ProteinID: EHR78980
UniProt: H3ZM36
Position
799771..802425
AA seq 884 aa
MMIEKIIVRDFRSHEFTKVTFAPGINLIIGQNGSGKSSLLDAILVGLYWPMKPKDLKKED
ILRVNGKSTEITIFFEKDNVKYQLHRNITKGIAFVKYQEGQGWHYATEASQQSVRRWMEK
MIPYDVFVNAIYIRQGEIDAILESDESREKVVRKVLGLDKYENAYNNLLEVRKTIDSKIS
AIEEYLTAMKNIDEMIEETRKSLSEAIKQINELTPKIPKLRAEAERIEKRLSELDELLEQ
LNKAKEEKNEIEKDLEGVKTRISSLIKSTNERKEKINELKKKFEKLEKIKPQAERYMELE
KFQREYSEIKSRIEKELKGYEGKLSQIEERVKELVQKEEELKELEEKIEEIAERLETLKQ
HAEQYEDAMRIKKTVEDLRKRLSLSEEKIKALKDEIEEAKRRREEIRERLEKIGEEKGKL
RSLSGEKDKAISELMKAKGRCPVCGAELTDEHREELIKSYKIEIKKYMERMKELEKEEKE
LRAELLGIEKTLKKESTVIATEEILKQIKENEEKLAQFNLRELEKDAKEYEKLSKEKNQL
EGKLKSILEELKKKPVLEKTKRNIREKIENAKKELQKYDKKLKELGFENEEDLGAELEKL
RPLYEEYLGLLKVKDELEKEEKRLGKEEEELKDLEKQRKRLEEQLSMLKERITELEKKYN
KEEHERLRKEYIQAREALTKAETELENLEKRKEELSKNLENLQKERDNVKSKKKELEELR
KAKERVQELREKVRRFKNLLKEDALAKVGEYASEIFEELTEEKYSGISVKAKENKVVLGV
IYDGKERELSFLSGGERIALGLAFRLALSLYLAGEIPLLIMDEPTPYLDEERRRRLVDIM
ERYLRKIPQVIIVSHDEELKDAADRVVRVRLENGVSRVEEVEVG
NT seq 2655 nt   +upstreamnt  +downstreamnt
atgatgattgaaaagataattgtgagggatttccgctcacacgagttcacaaaggtaacg
tttgcacccgggataaatcttataatagggcaaaacggctccggaaaaagctcccttctc
gatgcgatacttgtaggcctttattggcccatgaagcccaaggatcttaaaaaggaggat
atcctcagggtaaatgggaaaagcactgagataacgatattttttgagaaagacaatgtg
aaataccagctccacaggaacataaccaagggcatagcttttgttaagtatcaagaaggt
cagggatggcactatgcaactgaagcaagccagcagtccgtgaggagatggatggaaaaa
atgattccctacgatgtatttgtgaacgcgatatacataagacagggagaaattgacgcg
atcttggagagcgatgaaagcagagaaaaggtcgttagaaaggttttaggtctggataaa
tatgaaaacgcctataacaaccttcttgaagttagaaaaaccatagactcgaaaatcagc
gcaattgaagaatacctcacagcaatgaagaacatagacgagatgatagaagaaactcga
aaaagcctaagcgaagctataaagcaaataaacgagcttacaccaaagattccaaagctg
agggcggaagctgaaagaatagaaaagaggctttctgaacttgacgagctgttggaacag
cttaacaaagcgaaagaagaaaagaatgaaattgaaaaggatctcgaaggagtaaagaca
aggataagctccttaatcaagtcaacaaatgaaaggaaagagaagataaatgaactgaaa
aagaaatttgaaaagcttgaaaaaatcaagcctcaagctgagagatacatggaactcgaa
aagttccagcgggaatacagtgaaataaaatcaaggatcgaaaaagagcttaaaggctac
gaaggaaagctttcccaaatagaagaaagagtcaaagagctagtgcagaaggaagaagag
ctaaaagagctagaagaaaaaatagaagaaatagcagaaaggcttgaaactctaaagcaa
catgcagagcagtatgaagatgccatgagaatcaagaaaacagtggaggatttaaggaag
agattatctctcagcgaagagaaaattaaagccctcaaagacgaaatagaagaggcaaaa
aggagaagagaggaaatccgcgagagacttgagaaaattggagaagaaaaaggaaagctc
aggagcctctccggagagaaagacaaggcaatatcagagctcatgaaggctaaaggaagg
tgtcccgtttgcggtgccgagcttacagacgaacacagagaagaactcattaaaagctac
aaaatagagattaaaaaatacatggaaaggatgaaagagctagaaaaagaggagaaggaa
cttagggcagagctcctgggaattgaaaagactttgaaaaaggaaagcactgtaatagca
accgaagagatattgaaacaaataaaagaaaatgaggaaaaactagcgcagtttaaccta
agagaactagaaaaagatgccaaagaatacgaaaagctctcgaaagagaagaaccagctt
gagggcaaacttaagagcatcttagaagaactcaaaaagaagccagtgctagaaaaaacg
aagagaaacataagagagaaaatagaaaacgctaaaaaggagcttcagaaatacgataag
aaactcaaagaactcggctttgaaaacgaagaagacctcggggcagagctcgaaaagttg
agacccctctatgaagaatacctaggccttttaaaggtcaaagatgagcttgagaaagag
gaaaaacgcctcggcaaagaggaagaagagctaaaagatttggaaaagcaaaggaaaagg
ctcgaagagcagctatctatgttaaaggagagaattacagaactcgagaaaaagtacaac
aaagaagagcacgaaaggcttagaaaagaatacatccaggctagagaagccctaacgaag
gcagaaaccgagcttgaaaacctcgaaaaaagaaaagaagagttgagcaaaaacctagag
aacctacagaaagaaagggataacgtcaagagcaagaaaaaagaactggaagagctgagg
aaagctaaggaaagagttcaagaactcagagaaaaggttagaaggtttaagaacctcctc
aaggaggatgcccttgcaaaagttggtgaatatgcaagtgaaatattcgaagagctcact
gaggagaaatactccggaataagtgtgaaggcaaaggaaaacaaggttgttcttggggtt
atatacgatggaaaggagagggagctctcattcttgagcggcggtgagagaatagccctc
ggtctggcgtttagattagccttatccctctaccttgcgggagagattcccctcctcata
atggacgagccgacaccttatctcgacgaggagaggagaagaagactcgtggacatcatg
gagcgctatctgagaaaaatcccgcaggtaataatagtttcgcacgacgaggagctcaag
gatgccgcagatagagtggtgagagtcaggcttgaaaacggcgtttcgagagtagaagaa
gtagaggtgggatga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (32)   

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