KEGG   Thioflavicoccus mobilis: Thimo_2866
Entry
Thimo_2866        CDS       T02397                                 
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tmb  Thioflavicoccus mobilis
Pathway
tmb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tmb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Thimo_2866
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tmb03021]
    Thimo_2866
   03400 DNA repair and recombination proteins [BR:tmb03400]
    Thimo_2866
Enzymes [BR:tmb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Thimo_2866
Transcription machinery [BR:tmb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Thimo_2866
DNA repair and recombination proteins [BR:tmb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Thimo_2866
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23 ApbA_C
Other DBs
NCBI-ProteinID: AGA91570
UniProt: L0H1Q3
Position
complement(3147126..3151346)
AA seq 1406 aa
MKDLLNIIRQQGQAAEFDAIKIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPISDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFESFVVVDPGMTQLERGQLMNDEQYLDALEENGDEFDARM
GAEAVFELLRTIDMPKEIRQMREDIESTNSETKIKKLSKRLKLMESLLESGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKRMALELFKPFIFSKLQLRGLAATIKAAKKMVERGAPEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQIEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERVGARGEGSVFSGIHEARRAYESG
KADLHARCRVRLREVVKGEDGVMRENTAVRDTTLGRALVFAIVPDGLPFELLDRPLGKKQ
ISRLINTCYRRLGLKETVVFADQIMYLGFRMATRAGVSIGLEDMAVPEEKARILAEAETQ
VKEIEDQYASGLVTNGERYNKVVDIWSYTNDQVAKSMMAKLGKEPVRDNEGREVLQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVLEPDCGTEKGLLMMPIIEGGDVVEPLRERIL
GRVAAVDIFQPATGELVCSAGTLLDEGWVERLELAGIDQVFVRSPISCESRLGVCAQCYG
RDLARGHRVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVNSIEIKAAGTVRL
HNIKTVQHHSGNLVAVSRSGELTVSDEKGLERERYKVPYGATLRVDSGDQVTGGQVVATW
DPHTHPVITEVAGRLRFEDFIEGVTVHVQTDEMTGLSSNVIIDPKQRPAIGRDLRPMVKL
VDEDGGELNIAGTEMPARYFLPPGAIVSTVDGAEVGVGDFIARIPQESSKTRDITGGLPR
VADLFEARKPKESALLAEVSGTVSFGKDTKGKQRLVITTDDGETYEELIPKWRHVNVFEG
ERVERGEIISDGELASHDILRLKGVRALAEYLVKEIQDVYRLQGVKINDKHIEVIVRQML
RKVEVTDTGDTRLLRGEQVEHTAVLAENERVVADGKVPAQWQPLLLGITKASLATESFIS
AASFQETTRVLTEAAVRGSTDRLTGLKENVIVGRLIPSGTGLSHHRARRQQRQAERLGEG
GQGKVEMTAAELEQALKQEFNTSDAE
NT seq 4221 nt   +upstreamnt  +downstreamnt
ttgaaagatctattgaatatcatcaggcagcaaggtcaggcggcggagttcgatgcgatc
aagatcggtctggcgtcgccggacatgatccgctcctggtcctatggcgaggtcaaaaag
cctgagaccatcaactaccgcaccttcaagccggagcgcgacgggctgttctgcgccaag
atcttcggtccgatcagcgactacgagtgcctgtgcggcaagtacaagcggctcaagcac
cgcggcgtcgtctgcgagaagtgcggcgtcgaggtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcgagtccggtcgcccacatctggttcctgaagtcgctg
ccctcgcgcatcgggctgctgctcgacatgacgctgcgcgacatcgagcggatcctctat
ttcgagtccttcgtcgtcgtcgacccgggcatgacccagctcgagcgcggccagctcatg
aacgacgaacagtatctcgacgccctcgaggagaacggcgacgagttcgacgcgcgcatg
ggcgccgaggcggtcttcgagctgctgcgcacgatcgacatgccgaaggagattcggcag
atgcgcgaggacatcgagtcgaccaactccgagaccaagatcaagaagctctccaagcgc
ttgaagctgatggagtcgctgctcgagtccggcaatcgccccgagtggatgatcctgacc
gtgctgccggtgttgcccccggacctgcggccgctggtgccgctcgacggcgggcgcttc
gcgacctcggacttgaacgacctctatcgccgcgtcatcaaccgcaacaatcgcttgaag
cggctgctcgacctggtggcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcaa
gagtccgtcgacgcgctgctcgacaacggccgccgcggccgggcgatcaccgggaccaac
aagcggccgctgaagtcgctcgcggacatgatcaagggcaaacaggggcgcttccgtcag
aacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtcgtcggcccgacg
ctcaagctgcaccagtgcggcctgcccaagcggatggcactcgagctcttcaagcccttc
atcttcagcaagctccaactgcgcgggctggccgcgacgatcaaggcggcgaagaagatg
gtcgagcgcggcgcccccgaggtctgggacatcctcgaggaggtcatccgcgagcacccg
gtcatgctcaaccgcgccccgacgctgcaccgtctgggtatccaggccttcgagccggtc
ctgatcgagggcaaggcgatccagctgcacccgctcgtctgcacggccttcaacgccgac
ttcgacggcgaccagatggcggtgcacgtgccgctgtcgctggaggcgcagatcgaggcc
cgggcgctgatgatggcctcgaacaacatcctttcgccggccaatggcgagccgatcatc
gtgccgtcgcaggacgtcgtcctcggtctctactacatgacccgcgagcgggtcggggcc
aggggcgagggttcggtcttcagcggcatccatgaggcgcggcgcgcctacgagagcggc
aaggcggacctgcatgcgcgttgccgcgtgcgcctgcgtgaggtcgtcaagggcgaagac
ggggtgatgcgcgagaataccgcggtgcgcgatacgaccctcgggcgcgctctggtcttc
gctatcgtccccgacggcctgccgttcgagctgctcgaccggccgctcggcaagaagcag
atctcgaggctgatcaatacctgctatcgccggctgggtctgaaggagacggtcgtcttc
gccgaccagatcatgtacctgggcttccggatggcgacccgagcgggtgtgtccatcggc
ctggaggatatggctgtgccggaggagaaggcccgcatcctggccgaggccgagacccag
gtgaaggagatcgaagaccaatacgcctcgggcctggtcaccaacggcgagcgctacaac
aaggtcgtcgacatctggtcctacaccaacgaccaggtggccaagtcgatgatggccaag
ctcggcaaggagccggtccgagacaatgagggccgcgaggtcttgcaggattcgttcaat
tcgatctacatgatggccgactcgggtgcccgcggctcggcggcgcagatccgccagctc
gccggcatgcgcggtctgatggccaagcccgacggctccatcatcgagaccccgatcacg
gccaacttccgcgagggtctgaacgtcatccagtacttcatctcgacccacggtgcccgc
aagggtctggccgatacggcgctcaagaccgcgaactcggggtacctgacccgccgcctg
gtcgacgtcgcccaggacatggtcgtcctcgagccggattgcggtaccgagaaggggctg
ctgatgatgccgatcatcgagggcggtgacgtcgtcgagccgctgcgcgagcgcatcctg
ggtcgtgtggcggcagtcgatatcttccagccggcgaccggcgagctggtctgctcggcc
ggcactctgctcgacgagggctgggtcgagcgcctcgagctcgcgggcatcgaccaggtc
ttcgtgcgttcgccgatcagctgcgagtcgcgactcggcgtctgcgcccagtgctacggg
cgcgacctggcccgcggccaccgggtcaatatcggcgagtcggtcggcgtcatcgccgcc
caatcgatcggcgagcccggcacccagctgacgatgcgcaccttccatatcggtggggcg
gcttcgcgggcggcggccgtcaacagcatcgagatcaaggcggccggcaccgtacgtctg
cacaacatcaagaccgtgcagcaccacagcggtaatttggtggccgtgagccgctcgggc
gagctgacggtgtccgacgagaagggcctcgagcgcgagcgttacaaggtgccctacggt
gccacgctgcgcgtcgacagcggcgatcaggtcaccggcgggcaggtggtcgcgacctgg
gacccgcatacccacccggtcatcaccgaggtcgccggtcggctgcgcttcgaggacttc
atcgaaggggttacggtgcatgtgcagaccgatgagatgacgggcctgagttcgaacgtc
atcatcgatccgaagcagcgcccggcgattggccgcgacctgcgcccgatggtcaagttg
gtcgacgaggacggcggcgagctcaacatcgccgggaccgagatgccggcccgctacttc
ctacccccgggggccatcgtcagcaccgtcgacggggccgaggtcggtgtcggtgatttc
atcgcccgaatcccgcaggagtcgagcaagacgcgcgacatcaccggcggtctgccgcgg
gtcgccgatctcttcgaggcgcgcaagccgaaggagtcggcgctcctggccgaggtctcg
ggcacggtcagcttcggcaaggacaccaagggcaagcagcgtctggtcatcacgaccgat
gatggcgagacctacgaggaattgattccgaagtggcgtcacgtcaacgtcttcgagggt
gagcgggtcgagcgcggggagatcatctccgacggcgagttggcctcgcacgacatcttg
cgcctcaagggggtacgggccttggccgagtatctggtcaaggagatccaggacgtctat
cgcctccagggtgtcaaaatcaacgacaagcacatcgaggtcatcgtgcgccagatgctg
cgcaaggtcgaggtcacggatacgggcgacacccggttgctgcgcggcgagcaggtcgag
cacacggcggtcctggccgaaaacgagcgagtggtcgccgacggcaaggtgccggcccag
tggcagccgctgctgctcggcatcaccaaggcctcgctcgcgaccgagtcgtttatctcg
gcggcctcgttccaggagacgacgcgggtgctgaccgaggccgccgtgcgcggctcgacc
gatcgtttgacgggcctcaaggagaacgttatcgtcgggcggctgatcccgtccggcacc
ggcctgtcccaccaccgcgcgcggcgccagcagcgccaggccgagcggcttggcgagggt
ggtcagggcaaggtggagatgacggccgccgagctcgagcaggccctcaagcaggagttc
aacacctccgacgcggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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