KEGG   Tuber melanosporum: GSTUM_00005350001
Entry
GSTUM_00005350001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12600  superkiller protein 3
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00005350001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00005350001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     GSTUM_00005350001
SSDB
Motif
Pfam: TPR_2 TPR_22 TPR_17 TPR_19 TPR_1 TPR_16 TPR_12 TPR_14 TPR_8 TPR_11 TPR_7 ANAPC3
Other DBs
NCBI-GeneID: 9187839
NCBI-ProteinID: XP_002837480
INRA: GSTUM_00005350001
UniProt: D5GAX8
AA seq 1253 aa
MRSSRGRWTLTLTLRSNWLLFTKPCMDDRTKCQTVVDKIVPFVKEKGTVAQQKRALRVLL
PESPIFGYLEGRIPHPSHTLGKLIHLVEEEEKVKINKEIANRRSRLGAVLGQVTLEVRKE
VYGNSPLEDLYQELINWSDDEEVRREADTKLLQHCYEKLLAFPKEKKPMLRNKVWKLADG
LVILKYPYELAWHIVIEWKDCENIGEHDVNVLREYHRSHFAKFGLKKQKSSRSALAFRIV
GEYCTMLEEYESVVDITRRGIKSMAADYSYTGLALQKNSDSMKVILARALIHYQSPKHHD
EAKALFGDVLQRNSKYGSALVGLGLILEEQHNYVDAADFLGQALALDPGDLKIMSEAAWC
DVLRGNFLEGLSRLKGCLGQITGVDARSRDFKAQVLWRIGQALWGSDEQCRADRSGPYHY
FRSAIESNQNFAPAYTSLGIYYQDIEGNSGRADRCFQKAFEISAGELEAAERLARNFAES
REWELVEIVARRAAEADKKRSVPGKGVSWPHSAIGVVELNAQNFSLAIPAFRAALSTSPN
DFHSLVGLGEAYTSAGRYVSALKVFLRAEALDPTNWFAKYMLANVRREIGEYEEASIGYR
AVLELRPKEFGVLVALSETQLASAWHDIEAGYFGRAADSAVESLEVAQKISGERPDAFNL
WRIVGDCCSVFSWIQSLVNRMPRGLVVQILKTEIDLTEFDILSEVDGVGSQALGDSEVDG
LTLCLNMAILAYKRAIYASAEDRHAHAVAWFNLGCAEYRSYVILPDKPMRHRMAAIRCFK
RTIKLEPGNHEFWNALGVATGELNPKVAQHALVRALYINEKNARVWANLATLYLLQNDIQ
LANEAFSRAQSADPEYALAWVGQGIIASLTGNEADAQDLFEHAFEIADSSSSLVKRRFST
ATFDKVIQLQYESGLVSLVGPIFALQKLRQEISDEPITLRLAALFGERVKDFVSASEKLE
VVCEKVEQKYETTESEEDLVCYAQAKADLARVKLGQEDYEAAVENATLALDISGEISRLE
DCRLSAHLTAGLGYYYSGNMDESLEMFKAALNESSENPDVVCLLSQVLWAKGGDEERDVA
RKLLFTCIERNPDHLQSIMLLGAIGILDNNEDVLEAVMDDLQAVRGREGLIKASKQQVDS
LLTKMAQLQERDDAIAVATTSIFIQPSLSSAWNNLAKLTDGNDHVMAMALKVAQESKALD
AEELSFAYAQQGIMSCNQRAIIIAPWKVDGWVNLVEDVQAAALPRSAVDSSWY
NT seq 3762 nt   +upstreamnt  +downstreamnt
atgagaagttcgaggggaaggtggactcttacattgacgctgcggtcaaattggctacta
tttacgaagccatgtatggatgaccggacgaagtgtcagacagtggtagataaaatagta
ccttttgtgaaggagaaaggaacagtagcacagcaaaaacgtgccttgcgagttcttctt
ccggaaagtccaatatttggatacctggagggccgtataccccatccttcgcataccctc
ggaaaactgattcaccttgtagaagaggaggaaaaggtgaagataaacaaggagattgcg
aaccggaggtctcgacttggcgccgtgcttggccaagttacgttagaggttaggaaggag
gtttatggcaattctccgttggaagatctataccaagagcttatcaattggtcggacgat
gaggaagtaaggcgggaggcagataccaagctgctacaacattgttatgagaaactctta
gcctttccaaaagagaagaaaccgatgctcagaaacaaagtctggaaactggccgatggg
ttggtgatccttaagtatccgtatgagttagcgtggcatattgttatcgagtggaaggac
tgcgaaaatattggtgagcatgatgtgaatgtattaagagaatatcaccgttcccacttc
gctaaatttgggttgaaaaaacaaaagagctcacgatcagcacttgctttccgcatcgtg
ggtgaatactgcactatgcttgaggaatatgagtctgttgtcgacattacaaggcggggt
atcaaatcaatggccgccgactacagctacacagggctcgcacttcagaaaaattcagat
tctatgaaagtaattctggcaagggccttgattcattaccagtctccgaaacatcacgac
gaagcaaaggctttattcggggatgtgcttcaacggaattcaaagtatggatctgctctc
gttggtttaggcttgatccttgaggagcagcataattatgtcgatgctgccgattttcta
ggacaagccttggctttagaccctggtgatttgaagataatgtcggaggcagcgtggtgt
gatgtgcttaggggaaatttcttggaagggttgagtaggttgaaggggtgtttgggacag
ataactggtgttgatgctagatcacgcgatttcaaagcccaagtgctatggagaatcgga
caggcgctttggggttctgatgaacagtgtagagccgaccggagtgggccttatcattac
tttagatctgcaattgagagtaatcagaactttgcaccagcctataccagtctgggaatt
tactaccaggacatcgaaggaaattcgggcagggcagacagatgttttcagaaggcattt
gagatctcagctggagaattggaggcagccgagcgtcttgctagaaactttgccgagagc
cgggagtgggagttggttgagattgtggcaagaagggccgctgaagccgataagaagaga
tcggtaccagggaagggtgttagttggccgcatagtgctattggtgttgtagagctcaac
gcccagaacttttctttggctatacctgcttttcgagctgctttgagcacttcacctaac
gactttcattcgttggtgggcctaggagaggcatatacatcagcgggaaggtacgtttca
gccttgaaggtcttcctccgagcagaggcccttgatccgacaaattggttcgccaagtat
atgttggccaacgtaaggcgtgagattggtgaatatgaggaggcgtctattggttatcgt
gcggtgcttgagttaagaccgaaggagtttggcgttcttgttgccttgtcagagacccaa
ttggcctctgcatggcatgatattgaggccggatatttcggacgtgctgcagatagtgcc
gttgaaagcttggaagtcgcgcaaaagatttccggagagaggccagatgccttcaatctc
tggaggattgttggagattgctgttcagtctttagctggatacagagtttggtaaaccgc
atgcctaggggtttggttgtgcagatactcaagaccgaaatcgacttgaccgagtttgac
atcctttcagaagttgatggtgttggttctcaggccttaggcgattccgaagttgatggt
ctcaccttgtgtttgaatatggcaatactggcgtacaagagggctatttatgccagcgcg
gaggataggcatgcgcatgccgtcgcatggttcaacctaggctgtgcagaatatagatcc
tacgttattttacccgataagcccatgagacataggatggcggccattcggtgctttaag
aggactatcaagcttgagcccgggaatcatgaattctggaatgcgctaggtgttgctaca
ggggagctcaatcccaaagtagctcaacatgctcttgtgagggcattatatattaacgag
aagaatgctagggtttgggcgaatttggcgacattatatctcttgcagaatgatatacag
ttggcaaatgaggcattctctagagctcagagcgccgatcctgagtatgcgctggcgtgg
gtcgggcaaggcatcattgcttcgttgacaggtaacgaagcagatgcgcaggacttattt
gagcatgcctttgagatagcggacagttcttcctcacttgtgaaacgtcgattttcaacg
gcaacatttgataaggtcattcagttgcaatacgaatctggactggtttctctggtaggg
ccaatatttgcattgcaaaaactacgacaagagatatccgatgagcctattacgctccgc
ctagcggcactatttggcgagcgtgttaaagactttgtatcagcctcagagaagctcgag
gtcgtctgtgaaaaggtggagcaaaaatacgagactacagagtcagaggaggacctggtt
tgttatgcacaagcgaaggcagatcttgcccgggtcaagctcggccaggaggactacgag
gcagcggtagagaatgccactcttgctttagatatctccggggagatatcgagactagaa
gattgccggctgtcggcacacctcacggctggtttgggatattactattctggaaacatg
gatgagagcttggagatgttcaaggctgcgctgaatgagtcttcggaaaacccagatgtg
gtctgtttgctttctcaggttctctgggcgaaaggcggggatgaggagagggatgttgca
aggaagctgttatttacttgtatcgaaagaaaccctgaccatcttcagtctataatgctg
ctcggagccatcggaattttagacaacaatgaagatgtcttggaagccgttatggatgat
ttacaggctgttcgaggtagagaaggtttaatcaaggcttcaaagcaacaagttgatagc
ctactcaccaagatggctcaactccaggaacgagacgacgctatagcagtagccacaaca
tccatcttcatccagccatctctttcgagcgcatggaacaatctggcaaagctaactgat
ggaaatgatcacgtcatggcgatggcgctcaaggtggcgcaggaaagcaaagcgttagac
gcggaagaactgtcatttgcctatgctcaacagggtattatgagctgtaatcagagggca
ataatcattgctccatggaaggtcgatgggtgggttaaccttgtggaggacgttcaggct
gctgccctgcccagatcagcggtggattctagctggtattga

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