KEGG   Tuber melanosporum: GSTUM_00011472001
Entry
GSTUM_00011472001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
tml  Tuber melanosporum
Pathway
tml03015  mRNA surveillance pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSTUM_00011472001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00011472001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00011472001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00011472001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     GSTUM_00011472001
   mRNA cycle factors
    Stress granule specific factors
     GSTUM_00011472001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   Complex C specific factors
    GSTUM_00011472001
SSDB
Motif
Pfam: PABP DUF6844 FAM192A_Fyv6_N
Other DBs
NCBI-GeneID: 9182812
NCBI-ProteinID: XP_002841986
INRA: GSTUM_00011472001
UniProt: D5GNT4
AA seq 335 aa
MNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIRIQQQAAAAGMQPAGFLSAQMYYG
PGQQAGFMPQSGRGLPFPQPSMMPMTSGPQGGPGGPGSRGPQAGNFVPNAGRPGPQGPIP
PGIPQQMYGPPAMGPGAGPGGPGFSPYPPNTLAAAQAQAVAASQGRGRGSVPPAGMAGIQ
QGIANMNMGPRGPVQPGRGGPRGNLPPQTQPGRPPAPPQIPHVSTSGIDPTLFAASPPQA
QKQLLGESLYPKIQRQHPELAGKITGMLLEMDNMELLALLDDEQALIAKVDEALSVYDEY
VKTRTGDDIGGHEGATTNDNENKGDEGKKEGEIKG
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgaaccagagaatggtaaatggcaaacctctctatgtcgctcttgctcagaggaaggat
gttaggaagagccaacttgaagcaagtattcaagctaggaatcagattaggatacaacag
caagctgcggccgccggtatgcaacccgctggatttcttagtgctcagatgtactatgga
ccaggccagcaagccgggtttatgcctcaaagtggccgtggtctcccatttcctcaacct
agtatgatgcctatgactagtggccctcagggtggtcctggtggtcctggtagtcgtggt
ccgcaagccggaaactttgttcctaacgctggccgccctggccctcagggtccaatccca
ccaggtatcccgcagcagatgtatggccctccagcaatgggccctggtgcaggacctggc
ggccccgggttttctccgtatccacctaatactctcgccgccgcccaggcgcaagctgtt
gcagcttctcaaggccgtggacgcggtagtgtgcctcctgctggaatggcaggaatacag
caggggatagctaatatgaacatgggccctcgtggtcctgttcaacccggtcgcggcggt
cctcggggcaatcttcctccccagacacagcccggtcgtcctcccgcccctccccagatt
ccacatgtatctaccagtggaattgatcccaccctatttgctgcctcgcctcctcaggcc
cagaagcaattgcttggcgaatctctctatcccaagatccagcgccagcaccctgagctt
gctggaaagatcaccgggatgttgttggagatggacaatatggagcttctcgcacttctt
gatgacgagcaagctctaatcgccaaggtcgacgaagctcttagtgtctatgacgagtac
gttaagactcgaaccggtgatgatatcgggggtcacgagggtgccacaactaatgataat
gagaacaagggtgatgagggcaaaaaagagggtgaaattaaaggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   INRA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (40)   

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