KEGG   Tremella mesenterica: TREMEDRAFT_20952
Entry
TREMEDRAFT_20952  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14679  tRNA ligase [EC:6.5.1.3]
Organism
tms  Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:tms00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tms03016]
    TREMEDRAFT_20952
Enzymes [BR:tms01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.3  RNA ligase (ATP)
     TREMEDRAFT_20952
Transfer RNA biogenesis [BR:tms03016]
 Eukaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    TREMEDRAFT_20952
SSDB
Motif
Pfam: RNA_lig_T4_1 tRNA_lig_kinase tRNA_lig_CPD AAA_18 2_5_RNA_ligase2
Other DBs
NCBI-GeneID: 18491255
NCBI-ProteinID: XP_007000449
JGI: Treme1_20952
Position
Unknown
AA seq 792 aa
ITSWKMTEHMYFNINNPFPTMARGLFTEELEEGEEGSPAIREEDKGRERIVGRGYDKFFN
IDEVPWTNWETMQDHTEGPYYITLKSNGCLILISAISPEYLLVASKHSLGTTVEQQTKVH
AEEGRKWLRRTLQKSGKTEAELAARLWERNLTAVLELCDDSFEEHVIATPVHWTGLHLHG
LNTNTATFSSLPPDQVAGMAQEFGFIPTKYIVLPNLSSVRVYTEQVSQSGSWEGEQIEGF
VVRCTVKSSPKEEGQPPYSPGTPFFFKVKFEEPYKLYRTWREITRVMLPLLQLSKLSEDN
RKQSEVDIWRKVGRKVSRGEEAVYADWVGDMMSDEPSLFDDYDRGVVRVREKFLAWTESE
GKEKWELAKKGKYKLKGLRKDKQQAETRIKEGLKKKWIIVPVAVPGCGKTMVGVALKEMF
GFTHTQSDDVRSNKTAPTFLKNIADLLKTHDVVYADRNNHIDKHYDELSNFTEKHKFLKS
FDIHLIGILWDVTSQPYHRVLRTCSQRVIQRGDNHQTLRPDMTPSAEHEVVVGQFIRNFT
LPPKDIFDLLITVPIDSSLEKTLSQIITDLRLPLNLAQPTEEDVKKAVQKAKEYRTTTPF
HPPATKVGRPPRYYALAPEISVVNLMDQLFHFLQSEQSDVLVLAREMYQGLKDERALTVN
PHITLVHEKTVADETERLGNEIGPHGRLWEVCKIIQGEMRMFKFRFTHLVWNDRVMALAV
DSLETEPNIKQEHGRGGEGTKEELDLPDDVRQVLHVTVGVKEGASAFESRALVRKLRETG
GSLRKGEVLEEG
NT seq 2376 nt   +upstreamnt  +downstreamnt
ataacaagttggaaaatgaccgaacatatgtatttcaacatcaataatccttttcctacc
atggcacggggtttgtttactgaggaacttgaagaaggagaggaaggatctcctgcgatc
agagaagaagataaaggaagagaaagaatagtgggtaggggttatgataaatttttcaac
atagatgaggtcccatggacaaattgggaaaccatgcaagatcatacggaaggaccgtac
tatatcactctgaaatcgaacggatgtctcatactgatctctgcgatcagtccggaatac
ttgttggtggcttcaaaacattcgcttggaacgacagtggaacaacagacgaaggtacac
gcggaagaaggaaggaaatggcttcgtcgtactctacaaaaaagtggaaagacggaagct
gaactagcggcgagattatgggagaggaatcttactgctgttcttgagctgtgcgacgac
tctttcgaagaacatgtcatagcaacacccgttcactggaccggtctacaccttcacgga
ctcaacaccaacacagccaccttttcttccctccccccagaccaagtcgctggaatggca
caggaatttggcttcatccccaccaaatatatcgtcctacccaacctttcctccgttcgt
gtatataccgaacaagtctctcagtccggttcatgggaaggagaacaaatcgaaggtttt
gtcgttcggtgcactgtcaaatcatctcctaaagaagaaggtcagcctccatatagtcct
ggtacaccattctttttcaaagtcaaattcgaagaaccttacaagttgtatcggacatgg
agagagatcacaagggtcatgttacctcttcttcagcttagtaaactttcagaggacaac
agaaaacaatcggaagtggacatatggagaaaggtcggcaggaaagtgtcgagaggagaa
gaagcagtttatgccgattgggtaggagatatgatgagtgacgagccaagtttatttgat
gattatgatagaggggtcgtcagagttcgggagaagtttctggcttggaccgaaagtgaa
gggaaagagaagtgggagttggcaaagaaggggaaatacaagctgaaagggttacggaag
gataaacagcaggcagagacgagaattaaagaaggtctaaagaaaaaatggataatcgtt
cctgtggctgtacccggttgtggaaagacaatggtcggagtcgctttgaaagagatgttt
gggttcacacatacacaaagcgatgacgtaaggagtaataagaccgcgccgacgtttctg
aagaatatcgcggatttgttgaaaactcatgatgttgtatatgcggatcgcaacaaccat
attgacaaacattatgacgagttatccaatttcaccgaaaaacacaaatttcttaaatca
tttgacatccacctcatcggtatcttatgggacgtcacatctcagccatatcatcgagtt
cttcgtacatgttctcaaagggtcattcaacgcggcgacaaccaccaaaccctccgtcca
gatatgacaccaagtgcggaacacgaagttgtcgttgggcaattcatacgtaacttcact
ttaccccctaaagacatatttgacctcctcatcaccgtccctatcgattcttcacttgag
aaaacactttcacagatcatcactgatctccgacttccgctgaatctggctcaaccgact
gaggaagatgtgaagaaggccgtacaaaaggcaaaagaatatagaaccacaacaccgttt
catccccctgctacgaaagtcggtcgtccgccacgatactacgctttagctccagagata
tctgtggtgaatctgatggatcaattgttccattttttgcagagtgaacaaagcgatgtc
ttggtccttgctcgggaaatgtatcaaggtctgaaagacgaacgggctctcacggtcaat
cctcatatcacgttggtacatgagaaaactgtagcggatgaaacggaaagactagggaac
gaaataggaccacatggaagattatgggaggtgtgtaagattatacaaggggaaatgagg
atgttcaaattcaggttcactcatctggtttggaatgatagggttatggctctggcggtg
gatagcttggagaccgagcccaacatcaagcaagagcatggccggggaggtgaaggaacg
aaggaagagttggaccttccagatgacgtcagacaggtactacatgtcactgtaggagtc
aaagaaggagcttccgcttttgaaagtcgggcgctggtgaggaaattacgtgagactgga
gggtcattaaggaaaggagaagtgttggaggaagga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (38)   

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