KEGG   Tremella mesenterica: TREMEDRAFT_29252
Entry
TREMEDRAFT_29252  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
tms  Tremella mesenterica
Pathway
tms03020  RNA polymerase
tms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TREMEDRAFT_29252
  09124 Replication and repair
   03420 Nucleotide excision repair
    TREMEDRAFT_29252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tms03021]
    TREMEDRAFT_29252
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_29252
Transcription machinery [BR:tms03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     TREMEDRAFT_29252
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TREMEDRAFT_29252
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD DZR Zn_ribbon_recom Zn_Tnp_IS1595 GpA_ATPase zinc_ribbon_10
Other DBs
NCBI-GeneID: 18491971
NCBI-ProteinID: XP_007003280
JGI: Treme1_29252
Position
Unknown
AA seq 123 aa
MAALRFCGDCNNLLYPRSDNNAHVLLYMCRNCQYTENAIPEPGFAPCVYKNDLLTVAREQ
AGEIRDLDNDPTLQRSNIQCPHCQKNGAVFYQDQALRVTTNMTLFYVCVHCKHLFRDPNV
KVR
NT seq 372 nt   +upstreamnt  +downstreamnt
atggcagctctacgattctgtggtgattgtaataatctactctaccctcgttcagataat
aacgcacatgtattactttacatgtgtaggaactgtcaatataccgagaatgccataccg
gaaccgggtttcgctccttgtgtatataaaaatgatctgttgacagttgccagagaacaa
gctggtgaaattcgagatttggataatgatccaactttacaaagatcaaatatacaatgt
cctcattgtcaaaaaaatggtgccgtcttctaccaagatcaagctttacgcgtgacgacc
aatatgactttattctacgtttgtgttcattgcaaacatttattcagggatccaaatgtg
aaagtgcgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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