KEGG   Tremella mesenterica: TREMEDRAFT_40112
Entry
TREMEDRAFT_40112  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
tms  Tremella mesenterica
Pathway
tms03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TREMEDRAFT_40112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tms03041]
    TREMEDRAFT_40112
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_40112
Spliceosome [BR:tms03041]
 Complex B
  Other components
   Prp19 complex
    TREMEDRAFT_40112
 Complex C
   Prp19-CDC5 complex
    TREMEDRAFT_40112
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    TREMEDRAFT_40112
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 18493113
NCBI-ProteinID: XP_007006047
JGI: Treme1_40112
Position
Unknown
AA seq 852 aa
MVRIIIKGGVWRNTEDEILKAAISKYGKNQWARISSLLVRKTAKQCKARWYEWLDPSIKK
IEWSKTEDEKLLHLAKLIPTQWRTIAPIVGRTATQCLERYQKLLDDAEAQDNDELGLGAG
DDEASRPAEGSSRGLRPGEIDTDPETRAARPDPIDMDDDEKEMLSEARARLANTQGKKAK
RKARERQLEEARRLAFLQKKRELKAAGINLRLKPKKKGMDYNADIPFEKQPAPGFYDVTD
ENAKAYAAPVGQTLRTLEGKRKQELEEQEEQNKRRRGEDGKPKSNQTAQFVAAREAQIKK
LKEQDQIIRRRKLNLPTPQVGERELEDIVKIGQAGEMARGLVNGENEATGKLLGDYEGLG
NAKMARTPRTAPEQDNIMNEARNLRQLSSVETPLLGQENTPLRTAEDQGTGFGGATPRQA
VQFTPNPLATPAHGGALATPRAAGGVTATPLRTPMRDNLSINTGATPYSETPRDERLRLA
ASRRALKAGFAALPKPENNFELAEVDDEEEEEDAPVLTEEDAAERDARLKAAREEEERLE
LERRSSVVKKGLPRPVNVNLERLVQDLDAATEGEYEDDSMAAAIHLINLEVARLVKHDSI
AHPLPGTFTPGGMLSEYDMPPDSFISQARSIIHSELAQSMGLPGASDEQLRLAISSTVDD
TPDAFIATWAETRQQLVFSPDLDQWIEATTLSPEQLRGAYEYSITQSRESMVQEATKASK
AEKKLAKQLGGYQAINAKHRAGILEAMEELQQAQRDLETFGMLRVMEEAAAPIRIELKRE
EVARLERRERDLQAKYAELVDERKERLAAIEQLEEDKIVLAAQAQLDLEQANGGDGDEVM
KGANGIGEVNGD
NT seq 2559 nt   +upstreamnt  +downstreamnt
atggttaggattatcatcaagggtggtgtttggcgtaacactgaggacgaaattctcaaa
gctgccatatcgaaatatggcaagaatcaatgggctcgaatttcttctttattagtgagg
aaaacagcgaaacaatgtaaagctagatggtacgaatggttggatcctagtatcaaaaag
attgaatggtcaaaaaccgaagatgaaaaacttcttcatctcgcgaaactcatacccact
caatggcgtaccatcgctcctatcgtaggacgtacagccacacaatgtctagagcgatat
cagaagctattggacgatgctgaggctcaagataatgacgagttgggattgggcgcaggg
gacgacgaagcttcaagacctgctgaaggaagtagtagaggactgagaccgggagaaatt
gatacggatccggagacaagggctgccagacctgatcctatcgatatggatgatgatgaa
aaagagatgttgtcagaagccagagctagactggccaacactcaaggcaagaaagcgaag
cgaaaagctagggagaggcagttggaggaggcgcgaagactagcttttttgcagaagaaa
cgcgaattgaaagctgctggcataaaccttagattgaagccaaagaagaaaggcatggat
tataacgccgacattccatttgagaaacagcctgcccctgggttctacgacgtgacggac
gaaaatgccaaagcatatgcggcccctgtggggcaaacattacggaccctggaaggaaag
cgcaagcaggagctcgaggaacaagaagagcagaacaaacggcggcgaggggaagacggc
aagccaaagtctaaccagaccgcccagttcgttgctgcccgcgaagcacagatcaagaag
ctcaaagagcaagatcagatcattcggagacggaaattaaatcttcccacccctcaagta
ggagagagggagctcgaagatatcgtcaagattggtcaagctggtgagatggctaggggg
ttggtgaatggggagaacgaggctactggaaagctgctgggggattatgaagggttgggc
aatgcaaagatggcacgtacgccaagaactgcacccgaacaggacaatatcatgaacgag
gcaagaaatctacgacaactttcaagcgttgaaactcctctcctgggtcaggaaaacact
ccactccgtactgccgaagatcaaggtactgggtttggcggtgcaacgcctcgtcaagcc
gtacagttcactcccaatccacttgctacccctgcccacggaggcgctctcgccactcct
cgtgctgctggcggagtaactgccacaccccttcgcacgcctatgcgagacaatctgagc
atcaacactggtgccacgccatatagcgagactcctcgggacgaacgccttcgacttgcc
gcttctcgtcgtgcgctcaaagccggtttcgccgctttgcctaaaccagagaataacttt
gagcttgcggaagtggatgatgaggaggaagaggaagacgccccagtcctcaccgaggaa
gatgcggccgaaagggacgctcgtctgaaagctgcccgcgaagaagaagagcgtctcgag
ctggaacgtcgaagctccgtggtcaagaagggtctgcctagacctgtcaacgttaacttg
gaacgtctggtccaggatctagacgcagccaccgaaggcgagtacgaggacgactcaatg
gcggcggcgatacacttgatcaacttggaagtggctcgattagtgaagcacgactctatc
gcccatcctcttcctggcaccttcacccctgggggcatgctgtcagaatatgacatgccg
cctgattctttcatttctcaagcacgtagtatcatccattcggaactcgcacaaagtatg
ggattaccaggagcgtccgatgaacaacttcgactcgccatatcttcgactgtcgacgac
acacccgacgcgttcatcgccacttgggcggaaactcgacaacaactcgttttctccccc
gatctggatcaatggatcgaagccaccactctcagcccggaacagctgagaggagcgtac
gagtactccatcactcaatcgcgcgagtcaatggtgcaagaagcgacgaaagccagtaag
gcggagaaaaagctggcaaagcagttgggagggtatcaggcgatcaatgccaagcataga
gcggggattttggaggcgatggaggagttgcaacaggctcaaagggatttggagacgttt
ggaatgttgagagttatggaggaggccgctgcgccgattaggatagagctaaaaagggaa
gaggtggcgaggttggaaagaagagagagggatttacaggcaaaatacgcggaactggtc
gatgagcggaaagagaggttggcggctatcgagcagctggaagaggataagattgtccta
gccgctcaggcacagctggacctcgaacaagccaacggtggagatggagacgaggtcatg
aaaggggctaatggaatcggagaggtgaatggggattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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