KEGG   Tremella mesenterica: TREMEDRAFT_72500
Entry
TREMEDRAFT_72500  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K11095  U1 small nuclear ribonucleoprotein C
Organism
tms  Tremella mesenterica
Pathway
tms03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TREMEDRAFT_72500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tms03041]
    TREMEDRAFT_72500
Spliceosome [BR:tms03041]
 Complex A
  U1 snRNP components
   U1 snRNP specific factors
    TREMEDRAFT_72500
 Complex B
    TREMEDRAFT_72500
SSDB
Motif
Pfam: zf-U1
Other DBs
NCBI-GeneID: 18498747
NCBI-ProteinID: XP_007008190
JGI: Treme1_72500
UniProt: R7SCK1
Position
Unknown
AA seq 193 aa
MGKYYCDYCDIYLTHDSMNARKAHNTGRNHVSNVRDYFASLGHDTAQSIIDQIVQQHETG
GRAAMYAAPSMRLGAGFLNPNPTGAMNFGPPPPMAPFPPPGFVSPPGPPGMSGPPGIRPP
FPPPGMGAPMPPFPPPGGMPPFPPQQNGPNAPMMNSPLPNGQGAPPQGFTPAQGPPPPGN
VGIHPDRLRMMGM
NT seq 582 nt   +upstreamnt  +downstreamnt
atgggcaagtactactgtgattattgtgatatctacctaactcacgattccatgaacgct
cgaaaggctcataacacgggaagaaatcatgtttccaacgtacgggattatttcgcttct
ttaggtcatgatacagctcaaagtatcatcgaccagattgtgcaacagcacgaaactggt
ggaagggccgctatgtatgcagcacctagcatgagactcggagctggatttctgaatcct
aatccgactggagcgatgaacttcggcccaccaccacctatggcaccctttccacctccc
ggcttcgtctctcctcccggcccacccggtatgtccggtcctccaggtatccgtcctccc
ttccctccacccggtatgggcgctcctatgcctcctttccctcctccaggcggtatgccc
ccttttcctcctcaacagaacggcccgaatgccccaatgatgaactctcctctacccaac
ggtcaaggtgctccgcctcaagggtttactccagcacaaggacctccaccgccagggaac
gtgggtatacatccagatcgtttaaggatgatgggtatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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