KEGG   Thermoanaerobacter mathranii: Tmath_1374
Entry
Tmath_1374        CDS       T01250                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tmt  Thermoanaerobacter mathranii
Brite
KEGG Orthology (KO) [BR:tmt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tmt03016]
    Tmath_1374
Enzymes [BR:tmt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Tmath_1374
Transfer RNA biogenesis [BR:tmt03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Tmath_1374
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS HVSL RNA_binding
Other DBs
NCBI-ProteinID: ADH61088
UniProt: D7APH2
Position
complement(1367676..1368224)
AA seq 182 aa
MRTFIGIELGEKATDELSRFQEVLKNYTIKGRWTHKDNFHITLKFLGEIEAESITEIEDA
VKVAAKSINPFYIKFDKVGFFKGNKDMRVLWVGTEENPFLNKLHDNIDEELHKIGFKKDE
RKFTSHITIARDIRLNIGIEEVNNLFEKQKKNDILVDTVFLYESVIQENRRKYIPIFSVP
LR
NT seq 549 nt   +upstreamnt  +downstreamnt
atgaggacatttattgggatcgagttaggtgaaaaagctacagatgaattatcgagattt
caggaggtactgaaaaattatacgataaaaggaagatggactcataaagataatttccat
ataactttaaagtttttaggagaaatcgaggcggaaagcataaccgaaatagaagatgct
gttaaagttgctgcaaaaagtattaaccccttttatataaaatttgataaagtaggtttt
tttaaaggtaataaagacatgagagtattgtgggtaggtacagaagaaaatccttttctt
aataaattgcatgacaatatagatgaggaattgcataaaattggatttaaaaaagatgag
agaaaatttacttcccacattaccattgccagagatatacgtttaaacattggaatagaa
gaagtaaataatctttttgaaaaacaaaagaaaaatgatattttggtcgatacagttttt
ttgtatgagagtgttatacaagaaaatagaagaaaatatattcctatatttagtgtgcct
ttaagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system