KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00011955G001
Entry
GSTEN00011955G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GSTEN00011955G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tng03021]
    GSTEN00011955G001
   03036 Chromosome and associated proteins [BR:tng03036]
    GSTEN00011955G001
Transcription machinery [BR:tng03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     GSTEN00011955G001
   Coactivators
    SAGA/TFTC/STAGA complex
     GSTEN00011955G001
Chromosome and associated proteins [BR:tng03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     GSTEN00011955G001
    STAGA complex
     GSTEN00011955G001
    TFTC complex
     GSTEN00011955G001
    SAGA complex
     GSTEN00011955G001
    SLIK complex
     GSTEN00011955G001
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 RMC1_N Nbas_N WD40_like Ge1_WD40 PROPPIN DUF3109
Other DBs
NCBI-ProteinID: CAF95347
UniProt: Q4SVI5
Position
18
AA seq 600 aa
MKRVRPEQIQYAVAQFMKRRQYVDTDSSLKGAKLFQSAEEMAASLTVQTESGCANIVTAA
PCQADPQQYETQYARLRTFLSETEISWAKEVSCILYPLFVYLHLDMVLCGLKGAVDGFYS
RFHGAFLQDSEQRATIEQLRHVLTAQDIAANSKLSALLEHKYVVHMTEPAYSYLLRYLQS
EDNSTVCRALSTHLQVEVTASRRTDYQLYGSTVGVTPAANSTSSWVGVDGADGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQMLNAAEVSADSRLLAAGFDS
STVKLWSLRARKLKARAHQSDVSHIHLACDVLEEEGDEEDDYGSEIKTMRGHSGPVFRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHTYPVWDVDVSPCSLYFASASHDRTAR
LWTFSRTYPLRIYAGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIWNSHGGTSADGSSSELVGMYTGNTSSVLNVQFMACNLLLVTGTAQEKAEQ
NT seq 1800 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgccctgagcagatccagtatgccgtggctcagttcatgaagcggagg
cagtatgtggacactgacagttccttgaagggagcgaagctgtttcagtctgctgaggag
atggctgccagcctcacagttcaaacagagtctgggtgcgccaacatagtcaccgctgct
ccctgtcaggctgaccctcagcagtatgagactcagtacgcgcggctgcgcacctttctc
tcagaaactgaaatatcgtgggcgaaggaggtgagctgcattctctaccctctgtttgtc
tacctccacctggacatggtgctgtgtggccttaaaggggccgtcgatgggttttacagc
cgcttccacggagcctttcttcaggacagtgaacagcgtgccactatagagcagcttcgc
cacgttctcaccgcccaggacattgcagccaactccaagctgagtgccctcctggagcac
aagtatgtggttcatatgacggagccagcctacagctacctgctacgctatctacagagt
gaagacaacagcaccgtctgcagggccctgagcacgcacctacaggtggaggtcacagcc
tccaggcgaacagactaccagctgtacggatctaccgttggagtaactcctgcggcaaac
tccacctcctcttgggtgggggtagatggggccgatggcggggagggggtggaggtccca
gcaggtattccgcaaagtgaagcagccctcgaagctctgcaggactgcatcaagaaggtc
cgcgagggccccccgaccctcacaaccgtgtgtttctacgctttccaccacacggagcag
atgctcaacgccgctgaggtttcagccgacagccggctgctggccgctggcttcgacagc
tccacggtgaagctgtggagcctgagagccaggaagctcaaagccagagcgcaccagtct
gacgtgtcccacatccacctggcctgtgacgtcctggaggaggagggggacgaagaggac
gattacggcagcgagatcaagacgatgcgaggccacagcggtccggtgtttcgcaccgcc
ttcctgacggacagctccggcctgctgtcgtgctccgaggataccaccatccgttactgg
gacctgggcagcttcaccaacacggtgctctaccagggccacacctacccggtgtgggac
gtggatgttagtccctgcagcctttactttgccagcgcctcccatgaccgcaccgcccgt
ctctggacgttctcccgcacttatccgctccgcatctacgccgggcatctttcagatgtg
gactgtgtcaagttccaccccaattccaattatctggctaccggctccaccgataagacg
gttcgactgtggagcacccagcagggggcctctgtccgtctctttactggacaccgtggc
ccggtgctgtctctcgccttctcacccaatggaaaatatctggcttcggcgggggaggac
cagagggtgaagctgtgggatttggcctcgggaacactgttcaaagacctgcggggccac
accgacagtgtcaccagcttgtccttcagcccggacagcagcctcgtggcgtcttcatct
atggacaactcagtcagggtgtgggacatctggaactcccatggcgggacgtcagctgac
ggctcgtccagcgagctggtgggaatgtacactgggaacaccagcagcgtgctcaatgtg
cagttcatggcctgcaacctgctgctggtgacggggacggcccaggagaaggccgaacag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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