KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00019215G001
Entry
GSTEN00019215G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03020  RNA polymerase
tng03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GSTEN00019215G001
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSTEN00019215G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tng03021]
    GSTEN00019215G001
   03400 DNA repair and recombination proteins [BR:tng03400]
    GSTEN00019215G001
Enzymes [BR:tng01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GSTEN00019215G001
Transcription machinery [BR:tng03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     GSTEN00019215G001
DNA repair and recombination proteins [BR:tng03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      GSTEN00019215G001
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_1 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-ProteinID: CAG00699
UniProt: Q4SF83
Position
undetermined
AA seq 1745 aa
GHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMD
PKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAA
AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV
DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI
IRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRI
LPWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPY
NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD
VFLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDD
EDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNI
QTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNT
LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN
VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV
KTAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNL
ATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMKEDREIL
RAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSVSLNEICCSP
PFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCS
KRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG
VSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTA
NTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDSQTDHGAD
CREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQ
TDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVIQSLS
CLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTC
RGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAG
TGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPA
YGAWSPSVGECLPRSFFLCFILKFQVLSGTFFSPPSRKRNDTGGGGLLSQRSIRCKWLLS
GLFPGLVAHTWLSWFSRAGQPLHPISRWSYVTQLLAYFSSLRASFPWRLHPSEPWLLPNI
PFLLSHFSLLLPHQPQLQSHFPLLFANLPPVTLQPPPPTRPRLHPTLPHLLPTLLRPPLT
PQPHPLILPPRQATARHHPVTAQRHPATRPLHLPRPPLLHRRAPHLPRTPPPPLRTLPPL
LPTLPPVQATALHPQTTPHLTILKVPLTAPRHLGTAPPPPPTARPSAPTTAMRRTDVRRA
RRGGS
NT seq 5238 nt   +upstreamnt  +downstreamnt
ggccacggaggttgcgggcgctatcagccccgtattagacgctctggcttggaactctat
gcagagtggaagcatgttaacgaggattctcaagagaaaaaaatcctgttaagcccagag
cgagtgcacgagatcttcaaacgcatttctgatgaagaggacatgattttgggcatggac
ccaaagtttgcccggccggaatggatgattgtaactgtgctacctgtgcctcctctggct
gtcaggccagccgtggtcatgcaaggctctgcacgtaaccaggatgacctgactcacaag
cttgctgacatcgtaaaaatcaacaaccagctgaggcgaaatgagcagagtggagctgca
gctcacgtcatcgctgaggacgtcaaactgcttcagtttcatgtggccactatggtggac
aacgaactgccaggcctgcccagggcaatgcaaaagtctggccgtcctctaaaatccata
aaacagcgccttaaagggaaggaaggcagagtccgaggtaacctcatgggcaagcgtgtg
gacttctcggccagaacggtcatcaccccagaccccaacctgcaaatcgaccaagtgggc
gtaccacgatccatcgcagccaatatgacatttccagaaatcgtcacgccttttaacatt
gacaggctacaagagctggtgcgaagaggtaacagccagtaccctggagccaagtacatc
attcgcgacaacggagacagaatcgacctgcgatttcaccccaaaccaagtgaccttcac
ctccagattggttacaaggcaagctctaaagctttacacatgtgcgatggcgacatcgtc
atcttcaaccggcaacccacactacataaaatgtcaatgatgggacacagggtcaggatc
ctcccatggtccacatttcgactcaatctcaggtacagacttaaacagggacgcgccgat
gctaaagcacagggcaaacctttgatagaattcccggtgtgtcgtattaatgcattagct
cagagctcacggtattgtatgtattttcctgatttctgcttcagtgtgacaaccccatac
aacgctgactttgacggagatgagatgaacctccacttgccccagtctctggaaacacgg
gcagagatccaggagctggccatggtgccacgtatgatcgtaacaccgcagtccaacagg
cctgtcatgggtattgtgcaggacactctcacagctgtccgcaaattcaccaagagagac
gtctttttagacagaggtgaagtgatgaatctcctgatgttcctgtctacgtgggatgga
aaaatgcctcagccagcaatcctcaagccccgtgcactgtggaccggcaagcagatcttc
agcctaatcattcctggacacattaatgtgatccgcacacacagcacacatcctgatgat
gaagacagcggtccgtacaaacacatctcacccggtgacaccaaggtcatagtggagaat
ggggagctgatcatgggtatcctatgcaagaaatccttgggaacctcggctggctccctc
gtccacatctcctacctggagatgggccacgacattacccggctcttctattcaaacatc
cagaccgtggtcaacaactggctgctcatcgagggtcattccattggtatcggtgattcc
attgctgatgctaagacctacctcgacatccagaacaccatcaagaaagccaaacaagat
gtgatagaagtcatcgagaaagcccacaacaatgagctggagcccactcctggtaacacg
ctgaggcagacctttgagaaccaggtgaatcgcatcctcaacgacgctcgagacaaaacg
gggtcgtcagcgcagaagtctctctccgagtacaacaacttcaagtccatggtggtggcc
ggatctaaaggatcaaagattaacatctcacaggtcattgctgtggtggggcagcagaac
gtggagggtaaacgaatccccttcggattcaagcaccgcacgctgccgcacttcatcaaa
gacgactacggtcctgagagcagaggctttgtggagaactcctatttggctggcctgaca
cctacagagttcttcttccatgccatgggagggagagagggtctgatcgacacagctgta
aagactgctgaaacaggcaagtttgtgtgtagacgttacatccagcgtcgtctgatcaaa
tctatggagtcggtaatggtgaagtacgacggcacagtgcgtaactccatcaaccaggtt
gttcagctgcgttatggtgaagacggcctggctggagagaatgtggagttccaaaacttg
gccacactcaaaccctcacacagggcttttgagaagaagtttaagtttgactgcaccaac
gagcgggcactgaggcgaacgctgcaggaagatgtcgtaaaggatgtgatgacaaacgcg
catgtgcagagctccctggagagagagtttgagaagatgaaggaggacagggaaattctg
cgggcgattttccccacaggggacagtaaggtggtgctgccgtgtaatctggccagaatg
atctggaatgctcagaagatcttccgcattaacaccagaacccctacggacctcagccct
ctcagggtggttgaaggtatcctcagctctgtctcattaaatgaaatctgttgttcccca
cccttcactttgaatatttcaattgcagacattcaattcgagcatgtgtttggactttca
ggtactcacgagctcagtaagaagctggtcattgtgaacggcgatgacccgctgagcaga
caagctcagcagaacgccactctgctcttcaacatccacctgcgctccaccctctgctcc
aaacgcatgacagaagagttccgcctgtccaccgaggcctttgactggctgctgggagag
attgagaccaagttcaaccagtccattgcccatccaggtgaaatggttggtgctctggct
gctcagtccctgggagagccggccacccagatgacactgaacactttccactacgccggt
gtgtcggccaaaaacgtaacactgggcgtgcctcgtctgaaggagctgatcaacatctcc
aagaggcccaaaaccccctcgctgaccgttttcctgctgggtcaggcagcacgtgacgca
gagagagccaaagacatcctgtgtcgactggaacatacaaccttacgaaaggtgacggcc
aacactgccatctactatgacccgaacccccagaacaccgtggtggaggaggatcaggag
tgggtcaacgtctactatgaaatgcccgactttgacgtcacccgcatttcaccgtggctg
ctgcgcatcgagcttgaccgcaagcacatgacagactcgcaaactgaccatggagcagat
tgcagagaagatcaatgcagaatcatgaacagcgatgagtacaagttccaagaggatgag
gaagtggtagacaaaatggatgatgacgtctttttgagatgcatcgagtcgaacatgctg
acagacatgactctacaaggcattgagcagatcagcaaggtgtacatgcacttgccccaa
actgacaacaagaaaaagatcatcatcacagaggacggtgagttcaaggccctgcaggag
tggatcctcgagacagacggcgtgagcctgatgagggttctcagcgagaaggacgtagat
cccgtcaggaccacctccaacgacattgtggagatcttcacggtaatacaaagtctcagt
tgtttgataggattacgggagctttttgatggcgatcgtgtcccctcgtctggtttccag
gtgctgggcattgaggcggtgagaaaggctctagagagggagctgtaccacgtcatctcc
ttcgacggctcctatgtcaactaccgtcacttggctctgctttgcgacacgatgacgtgt
cggggccacttgatggctatcacgcgccacggcatcaaccgtcaagacacgggaccgctc
atgaagtgctcctttgaggagacggtggacgtgttgatggaggcatcttcccatggcgag
tgcgatccaatgaaaggcgtgtcggagaacatcatgctaggccagctcgccccagccggc
accggatgctttgacctgctgttggatgccgagaagtgtaaatacggcatggagattccc
acaaacatacctggcatcagtgtggctggatccaccggcatgttcttcggttcggcgccc
agccccatgagtggaatgtcgcctgccatgacaccctggaacacaggcgctacgccagcc
tacggggcctggtcccccagtgttggtgagtgcctgcccaggtctttttttttgtgcttt
atattaaagtttcaggtgctgagtggtacctttttttcccctccatccaggaagcggaat
gacaccgggggcggcgggcttctctcccagcgcagcatccgatgcaagtggcttctctcc
gggttattccccggcctggtcgcccacacctggctctcctggttctccagggccggccag
cccctacatcccatctccaggtggagctatgtcacccaactactcgcctacttctccagc
ctacgagcctcgttcccctggaggctacacccctcagagccctggctactccccaacatc
cccttcctactctcccacttctccctcctactcccccaccagccccaactacagtcccac
ttccccctcctattcgccaacctccccccagttactctccaacctccccctcctactcgc
ccacgtctccatcctactctcccacatctccttcctactctcctacgtccccctcttact
ccccaacctcaccctcttattctcccacctcgccaagctacagcccgacatcacccagtt
acagcccaacgtcacccagctactcgcccacttcaccttcctaggcccccacttctccat
cgtagggccccacatctccctcgtactcccccacctccccttcgtactctcccacctctc
cttcctactctcccaccagtccaagctacagccctacatccccaaactacaccccacctc
accatcctaaaggttccacttacagccccacgtcacctgggtacagccccacctccccca
cctacagcccggccatcagccccgacgacagcgatgaggagaactgatgtgcgtcgggcg
aggaggggcgggagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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