KEGG   Thioalkalivibrio nitratireducens: TVNIR_2550
Entry
TVNIR_2550        CDS       T02408                                 
Symbol
rpoA_[H]
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
tni  Thioalkalivibrio nitratireducens
Pathway
tni03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tni00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TVNIR_2550 (rpoA_[H])
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tni03021]
    TVNIR_2550 (rpoA_[H])
   03400 DNA repair and recombination proteins [BR:tni03400]
    TVNIR_2550 (rpoA_[H])
Enzymes [BR:tni01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TVNIR_2550 (rpoA_[H])
Transcription machinery [BR:tni03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TVNIR_2550 (rpoA_[H])
DNA repair and recombination proteins [BR:tni03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TVNIR_2550 (rpoA_[H])
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AGA34191
UniProt: L0E0L9
Position
complement(2645554..2646564)
AA seq 336 aa
MSLAAGVEMQANELVNKQHIEVEAENRNKARVVLEPLERGFGHTLGNALRRVLLSSIPGA
AIVEVEIEGVLHEYSTIEGVQEDVVDILLNLKGVALRMHSREEATLSLRKRGPCVVTAGD
IALDHDVEVVNPEHVIANIAKNVELAMSLRLRKGRGYEPVAARRQGEMQDSTIGRLMLDA
SFSPIRRVAYRVESARLAQRTDMDRLVLELETNGAIAPDDAVRHAAGILQGQLAPFVDLK
ETAREAHAVSGGAVDPVLLRPVDELELTVRSANCLKAENIYHIGDLVQRTEVELLRTPNL
GKKSLTEIKDTLASHGLSLGMRLESWPPPGLQEPSE
NT seq 1011 nt   +upstreamnt  +downstreamnt
gtgagcctcgcggcgggagtggaaatgcaagcgaacgagttggtcaacaagcagcacatc
gaggtcgaggcggagaaccgcaacaaggcgcgggtggtgctggaaccgcttgagcggggc
ttcggccatacgctcggtaacgcgttgcggcgagtgctgctgtcgtcgattcccggtgcc
gcgatcgtcgaggtcgagatcgagggtgtgctgcacgagtattcgacgatcgaaggggtg
caggaggacgtcgttgatatcctgctgaacctgaagggtgtcgcattgcgcatgcacagc
cgcgaggaggcgacgttgtcgctacgcaagcgcgggccctgtgtggtaaccgccggagac
atcgcgctagatcacgatgtcgaagtggtgaaccccgaacacgtgattgccaatatcgcg
aagaatgtcgagttggcgatgtcgttgcggctgcgcaaggggcgcggctacgagccggta
gctgcgcggcggcagggcgagatgcaggacagcacgatcgggcggctgatgctggacgcg
agcttcagcccgatccggcgggtcgcgtatcgggtcgagagtgcgcgtctcgcgcagcgc
accgacatggaccgtctcgtgctcgaacttgagaccaatggcgcgattgccccggacgac
gcggtgcgtcatgcggccggaatcctgcagggtcagttggcgccgttcgtcgatctgaag
gaaacggcacgtgaagcccacgcggtcagtggaggggcggtcgacccggtgctgctgcgg
ccggtggacgagctcgagctgaccgtgcgctcggcgaactgtctgaaggcggagaacatc
tatcacattggcgacctggtccagcgcacggaagtggagctgctgaggacgccgaacctc
gggaagaaatcgctgaccgagatcaaggacacactggccagtcatggcctctcgctgggg
atgcggctcgaaagctggccgccgcccgggcttcaggaaccctccgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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