KEGG   Thioalkalivibrio nitratireducens: TVNIR_2777
Entry
TVNIR_2777        CDS       T02408                                 
Symbol
hfq_[H]
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
tni  Thioalkalivibrio nitratireducens
Pathway
tni02024  Quorum sensing
tni03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tni00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TVNIR_2777 (hfq_[H])
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TVNIR_2777 (hfq_[H])
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tni03019]
    TVNIR_2777 (hfq_[H])
   03036 Chromosome and associated proteins [BR:tni03036]
    TVNIR_2777 (hfq_[H])
Messenger RNA biogenesis [BR:tni03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     TVNIR_2777 (hfq_[H])
Chromosome and associated proteins [BR:tni03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    TVNIR_2777 (hfq_[H])
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AGA34415
UniProt: L0DZP5
Position
complement(2865259..2865510)
AA seq 83 aa
MAKGQMLQEPFLNALRRDRIPVSVYLVNGIKLQGQIESFDQFVVLLKSAVSQMVYKHAIS
TIVPARQVRLSIEGEEPAEHKDA
NT seq 252 nt   +upstreamnt  +downstreamnt
atggcaaaagggcagatgctacaagaacccttcctcaacgcgctgcgccgcgaccgcata
ccggtctcggtgtatcttgtcaacggcatcaaactgcaggggcagatcgagtccttcgac
cagtttgtcgtgttgctgaagagcgcggtttcgcaaatggtgtacaagcacgcgatctcg
acgatcgttccggcacggcaggtgcgcctgagcatcgagggtgaggaacctgccgagcac
aaggatgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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