KEGG   Thioalkalivibrio nitratireducens: TVNIR_2954
Entry
TVNIR_2954        CDS       T02408                                 
Symbol
rpoS_[H]
Name
(GenBank) RNA polymerase sigma factor RpoS
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
tni  Thioalkalivibrio nitratireducens
Brite
KEGG Orthology (KO) [BR:tni00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tni03021]
    TVNIR_2954 (rpoS_[H])
Transcription machinery [BR:tni03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     TVNIR_2954 (rpoS_[H])
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r3 Sigma70_r4 Sigma70_r1_2
Other DBs
NCBI-ProteinID: AGA34592
UniProt: L0E017
Position
complement(3049214..3050245)
AA seq 343 aa
MPPQNRFLKQASIDLTDPELDALQEAEEADPVDPEVESIEEAEGIELDPVVVETGVRRQH
DAGPAELDAIQLYLRDIEFRPLLTPEEEVYYARLARAGDPTGRQRMIECNLRLVVKIARR
YMNRGLALLDLIEEGNLGLMHAVEKFDPERGFRFSTYATWWIRQTIERALMNQGRTIRIP
VHVSKELRAQNKVARGLMQELGREPTEDELATRLGKPVAEIQRLRAMSEPSTSIDIAVGP
DGDRSLTEILPDENSAGPSALLEDEDIRNLVAAWLEELDQKQREVLVRRFGLHGFERCTL
EQVGAEIGVTRERVRQIQMEALKRLRRLLKTRGLSEDVLLPRP
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgcccccacagaaccgcttcctgaagcaagcctccatcgatctgacagacccggaactg
gacgccttgcaggaggcggaagaggccgaccccgtcgaccccgaggttgaaagcatcgag
gaagccgaggggatcgagctggatccggtcgtcgtggaaacaggagttcggcggcagcac
gatgcgggccccgccgagctggacgcgatccagctctacctgcgcgatatcgagttccgc
ccgttgcttacgcccgaggaagaggtgtactacgcgcgcctcgcgcgcgccggggatccg
accggccgccagcggatgatcgaatgcaatctgcgcctggtggtcaagatcgcacgccgc
tatatgaatcgcggcctcgcgctgctcgacctgatcgaggaggggaatctcggtctgatg
cacgcggtggagaagttcgaccccgagcgcggtttccgcttctcgacctatgcgacctgg
tggattcgtcagaccatcgaacgagcgctgatgaaccaggggcgcaccatccggatcccg
gtccatgtgagcaaggaactccgggcgcagaacaaggtggccagagggttgatgcaggag
ctggggcgcgagcccaccgaggatgaactggcgacacggctcggcaagccggtagccgag
attcagcgcctgagggccatgtccgaaccgtccacatcgatcgacatcgcggtcggcccc
gacggcgaccgttcgctgaccgagattcttcccgacgagaattccgcaggcccgtcggca
ctgctcgaggacgaggacatccgcaacctggttgcggcgtggctggaagagctcgaccag
aagcagcgcgaggtgctggtacggcgcttcgggttgcacggcttcgaacgctgcacgctg
gaacaggtcggggccgagatcggcgtcacccgcgagcgcgtgcgccagatccagatggag
gcgctcaagcgcctgcggcgcctgttgaagacgcggggcctgtcagaggacgtgctgctc
ccgcgcccctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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