KEGG   Trichoplusia ni (cabbage looper): 113492940
Entry
113492940         CDS       T05757                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03030  DNA replication
tnl03410  Base excision repair
tnl03420  Nucleotide excision repair
tnl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113492940
   03410 Base excision repair
    113492940
   03420 Nucleotide excision repair
    113492940
   03430 Mismatch repair
    113492940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tnl03032]
    113492940
   03400 DNA repair and recombination proteins [BR:tnl03400]
    113492940
DNA replication proteins [BR:tnl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113492940
DNA repair and recombination proteins [BR:tnl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113492940
SSDB
Motif
Pfam: RFC1 BRCT AAA Rad17 PTCB-BRCT AAA_22 AAA_14 AAA_30 AAA_17 RuvB_N AAA_5 AAA_16 NTPase_1 AAA_33 AAA_18 RNA_helicase nSTAND3 BRCT_2 AAA_19 AAA_assoc_2 AAA_11
Other DBs
NCBI-GeneID: 113492940
NCBI-ProteinID: XP_026726477
UniProt: A0A7E5VDX1
Position
4:complement(9173139..9182064)
AA seq 1074 aa
MSRDIRTFFQLKKTPKPTVEDDDDVIPESPDVQITKPKKKDVKRRAIIKDDSDEEIFSTK
KKTNNTQATNKIKSPKPALKEVKVVDMFGNEPIKRTKPLINKKKKTELGIHSDDEFEKSL
LEIDNEQLESNEEASSSKIKEEKQSPTVQTDSNKTDKTPSKKKNKNNNLELNKESETSKT
PSRNDGTESKTSKTNKNNQTVSNSNNSSKKSKMEYSKRKFAEFLEDGDPDLSNKKKKLNE
SKTKSEEIDEDMDSSFIDDSDDKNKNKKKKFNKSLNESVLTDEERHERKMHSAALYKSYL
NRSGPKNLGAKEIPEGKHDCLKDCAFVLTGVLDSFEKDEITAAINQYGGVVKSGVTKKVT
HVLAGEDGGPAKMAKAEELGIPIINEDQFLKMITDRSQGKPTKSESKKEIKKEKSPVKKV
SKDKLSPKDKSVKDTDNHVENKTKKSPMDKIKTESKSTTSISRSKLDVNESKNHDKVKSP
KNIKEEKVGIKVEPSSSKASSQVSRTTTEFTEHPANASMWVEKYKPQNIKQIIGQHGDAS
NVKKLMNWLTKWYVNRQAKLPKPNPYAHNDDGGYYKAVLLSGPPGVGKTTTVSLVCKEMG
FDMVEFNASDTRNKTLIKEQIGELLNMTSLSGYAHGQVGKQALSKKHVLVMDEVDGMAGN
EDRGGLQELIGLIKTTSVPIICMCNDRNSQKMRSLVNYCYDLRFQRPKLEQIKAAMLSIC
CKEGVRIPADALSQLIVSAGHDVRQTLNLLSLWAAGASDPDTLRADAKVARKDFRLGPWD
VIEKVFSAEEHKTMSISDKSDLFFFDYSLGPLFVQENYLTVEPRCPKHETLQRISRAADS
ISLGDLVESKIRRSQAWSLLPTQAILSSVIPGFEMSGQKKGRTQFPGWLGKNSRATKFQR
LCQEIHAHTRLSTSGSKSSIFLDYSSHIRDAIVNPLIKDKLDGVTKSLEVLESYHLLRED
LDSLVELSLWPGKRDPTALIDSKVKAAMTRTYNKNARALPYAQAAVKRGKPKADDELAGE
DEAEAEAEDDEPPDSDPENDALIKKKKTKETDKPKATKSQTKAKPSTSKKKKEK
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgtctagagatataagaaccttctttcagctgaagaagactccaaaacccaccgttgaa
gacgatgatgatgtgataccagagtcgcctgatgtgcaaatcactaaacctaagaaaaag
gatgttaaaaggagagccataataaaagatgattctgatgaagaaatattttcaaccaag
aagaaaactaataatacacaagcaactaacaaaatcaaatcaccaaaaccagctcttaaa
gaggttaaagtagtagacatgtttggcaatgaaccaataaaaagaacaaagccattaatt
aataaaaagaaaaaaacagagctaggcatacattctgacgatgagtttgaaaagagcctt
ctagaaatagacaatgagcaattggaatcaaatgaagaagccagttcctctaaaattaaa
gaagaaaaacaatcgcctactgttcagactgattcaaataaaacagacaaaaccccatca
aaaaagaaaaataagaataataacttagaattaaataaagaatcagaaacaagtaaaaca
ccttcaagaaatgatggtactgaaagtaaaacatcaaaaacaaataaaaataatcaaaca
gtttccaattcaaataacagttcaaagaaatcaaaaatggagtatagtaaacgtaaattt
gctgaatttctggaggatggcgacccagatctgagtaataaaaagaaaaaacttaatgaa
agcaaaacaaagtctgaggaaattgatgaagatatggattcatcgtttattgatgacagt
gatgataagaacaaaaataagaaaaagaaattcaataaaagcttgaatgagtcagtgctt
actgatgaagaaagacatgaaagaaaaatgcattctgcagctttatacaagagctattta
aaccgatctggtcccaaaaatctaggagctaaggaaatcccagagggaaaacatgattgc
ctaaaggactgcgcgtttgtactgactggtgtcctcgactcgtttgagaaagacgaaata
acagcagcaatcaaccaatatggtggagttgttaaaagtggggtgaccaaaaaggtaacc
catgtcttagctggtgaagatggcggcccggccaaaatggcaaaagcagaagaactagga
atacctattataaacgaagatcaattcctcaaaatgatcacagacagatcacaaggcaaa
ccaacgaaatctgaaagtaaaaaagaaatcaagaaagaaaagagcccagtcaagaaagtt
tcaaaagataaattgagtccaaaagacaaatctgtaaaagacacagacaatcatgttgaa
aacaaaacaaagaagagcccaatggacaaaataaaaacggaatcaaaatcgaccactagt
atttcaaggagtaaattagatgttaatgaatcaaagaatcatgataaggtgaaaagtcct
aaaaatattaaggaagaaaaagttggaattaaagttgaaccaagttcaagtaaagcttcg
agtcaagtcagtcgcacaaccacagaatttaccgagcatccagctaatgctagcatgtgg
gtggagaaatacaagcctcagaacatcaaacaaattattgggcaacacggcgatgcaagc
aacgttaagaaactaatgaactggttaacaaaatggtatgtgaacagacaagctaaatta
ccaaaacctaatccttacgcacacaacgacgacggaggttattataaagcagtattgctg
tcgggtcctcctggtgtaggtaaaacaactacagtaagcttagtctgcaaggagatgggt
ttcgatatggtggaattcaacgcctcggacaccaggaacaagacgctcatcaaggagcag
attggggagcttctcaacatgacttcgctctctggatacgctcatgggcaagttggcaaa
caagcgttatcgaagaaacatgttctagtcatggatgaagttgacggcatggcgggaaat
gaagaccgaggtggcctccaagagctgatcgggttgatcaagacaacatcggtgcctata
atatgcatgtgcaacgacaggaacagtcagaagatgaggtcccttgtcaactactgctac
gatctccgttttcagagacctaaacttgaacagataaaggcggccatgttatcgatatgc
tgcaaggagggcgtgcgtatcccggcggacgcgctgtcgcagctgatcgtgtcggccgga
cacgacgtgcgccagacgctcaacctgctgtcgctgtgggcggccggcgccagcgacccc
gacactctgcgggcagacgccaaggtcgccaggaaggacttccgactgggcccctgggat
gtcatagaaaaggtattttcagcagaggaacacaagaccatgagtatcagcgacaagagc
gacctcttcttcttcgactacagtctcgggccgctgttcgttcaagagaactacttgacg
gtcgaacctcgatgtcccaagcatgaaacccttcagaggataagcagagctgcggacagt
atcagtttgggagacctggtcgaaagcaagatacgtcgcagccaagcgtggagtctcctg
ccgacacaggcaatattgagctcagtgatccccgggttcgagatgtccggacagaagaag
ggccgcacgcagttcccgggctggctcggcaagaactcgcgcgcaaccaagttccagcgc
ctctgccaagagatacacgctcacacccggctcagcacatcgggatcaaaatcttccatc
ttcctggactacagcagtcatattcgcgacgctatcgtaaatcctcttatcaaggacaaa
cttgatggcgtaacaaagtcgcttgaagtgttggagtcctaccacctgctgagggaggac
ctggactctttggtagaactgtccttatggccagggaaacgggatcctactgcacttata
gattcgaaggtgaaggcggccatgactcgcacgtacaacaagaacgctcgcgcgctgccg
tatgcgcaggccgccgtcaagcgcgggaagccgaaagcggacgacgagttggccggggag
gacgaggccgaggccgaggccgaggacgacgagccgcccgacagtgaccccgagaatgat
gcgctcatcaagaaaaagaaaactaaggaaacagacaagccgaaagccaccaaaagtcag
actaaggcgaaaccgtcaaccagtaagaagaaaaaagagaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (35)   

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