KEGG   Trichoplusia ni (cabbage looper): 113496483
Entry
113496483         CDS       T05757                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase Rpd3-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03082  ATP-dependent chromatin remodeling
tnl03083  Polycomb repressive complex
tnl04213  Longevity regulating pathway - multiple species
tnl04330  Notch signaling pathway
tnl04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113496483
   03083 Polycomb repressive complex
    113496483
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    113496483
   04350 TGF-beta signaling pathway
    113496483
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    113496483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tnl03036]
    113496483
Enzymes [BR:tnl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113496483
Chromosome and associated proteins [BR:tnl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113496483
   HDAC complexes
    Sin3A-HDAC complex
     113496483
    BRAF-HDAC complex
     113496483
    REST complex
     113496483
    SHIP complex
     113496483
    MiDAC complex
     113496483
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113496483
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113496483
  Chromatin remodeling factors
   NuRD complex
    113496483
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113496483
NCBI-ProteinID: XP_026731524
UniProt: A0A7E5VT94
Position
1:14118577..14123575
AA seq 485 aa
MAMQPHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
ADEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEXCQLSAGGSVAA
AVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDSYESI
FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGRCVELVKRFGLPFLLVGG
GGYTIRNVSRCWTYETSVALGVEIANELPYNDYFEYFGPDFKLHXFTSNMSNQNTQEYLE
KIKNRLFENLRMLPHAPGVQVQAIPEDAVNDESEDEDKVDKDERLPQSDKDKRITGDGEL
SDSEDEGEGGRRDNRSYRTPQPRKRPRLDKDGSQIKDEIKSEDTKDDVKNLSSVEEPKKE
IPPNP
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgatgcaaccgcatagtaagaaaagagtgtgctactactatgacagtgacatcggg
aactattattacggtcagggacatcctatgaaaccgcaccgtatacgcatgactcataat
ttactattaaattatggattgtaccggaaaatggagatatatagaccccataaagcaacc
gctgatgagatgacaaaattccattctgatgattatattcgcttcttacgatcaatcagg
ccagataatatgtccgagtataacaaacagatgcaaagattcaatgtcggtgaagattgt
ccagtgtttgatggtctctatgagntttgtcagctgtctgcaggtggatcagtggctgca
gctgtgaaattaaataaacaggcttctgagatttgtatcaattggggaggaggacttcac
catgccaaaaaatcagaagcctcaggcttctgttacgttaatgacatagtacttggaatc
ttagagttgctgaagtaccaccagagggtgttgtacattgatattgatgtccaccatggt
gatggggttgaggaagccttctacaccactgatagagttatgacagtgtctttccataaa
tatggagagtacttccctggaactggcgacttacgtgatattggtgctggaaaaggcaag
tactacgcagtaaacatacccctgcgcgatggaatggacgacgactcttatgaatccatc
ttcgtgcctatcatatcaaaagtcatggagactttccagcccagtgcggttgtcctgcag
tgtggagctgattcactgacaggtgacaggttaggttgtttcaatcttactgttcgaggt
catggccgatgtgttgagttagtgaagaggtttggcctacccttcttgctagttggaggc
ggaggttacacaattcgtaatgtgtcacgttgttggacctatgaaacatcagtggccctt
ggggtcgaaatagctaatgagttgccttacaatgattactttgaatacttcgggcctgac
ttcaagctacatnatttcaccagcaatatgtctaatcaaaatacacaggagtatttagaa
aaaattaaaaataggctctttgagaatctgagaatgttaccacatgcacctggtgttcag
gtacaagctattcctgaagatgctgtaaatgatgaatctgaagatgaagacaaagttgac
aaagatgaaagactgccacaaagtgataaagacaagcgcatcacgggagacggcgagtta
tcggactcagaagatgagggagagggaggccgccgcgacaaccgctcctaccggacgccg
cagccgcgcaagcgaccgcgcctcgataaggacggctcgcagatcaaggatgaaatcaaa
tctgaagacacaaaagacgacgtcaaaaacttaagcagtgttgaagagccaaagaaagaa
atacctccgaatccctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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