KEGG   Thermodesulfobium narugense: Thena_1238
Entry
Thena_1238        CDS       T01488                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tnr  Thermodesulfobium narugense
Brite
KEGG Orthology (KO) [BR:tnr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tnr03016]
    Thena_1238
Enzymes [BR:tnr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Thena_1238
Transfer RNA biogenesis [BR:tnr03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Thena_1238
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: AEE14857
UniProt: M1E571
Position
complement(1278464..1279009)
AA seq 181 aa
MRLFIAYKIHNKDAKDIYLNVMNCEAFKKHKIVDSKNYHITFKFLGETKLDIQLISERLL
ESLYNVKRFSFFFSNEIGYMPSRHNPKLAYLKIYEKDSKFEEVFRNVDLGMSNLGFEMEK
REFKPHLTLVRFREALLDDDIFPIYFKGKSRTESIMDKVSLFQSILMPDGPIYKEVFSVK
L
NT seq 546 nt   +upstreamnt  +downstreamnt
gtgagactgtttattgcttacaagattcacaataaagatgccaaagatatttatcttaac
gtaatgaattgtgaagcgtttaaaaaacataaaattgttgactccaaaaactatcacatt
acttttaagtttttaggagaaacaaaattagatattcaattaatttcagaaagacttttg
gaatcgctctataacgtaaaaaggtttagcttttttttctcaaatgagattggatatatg
ccatcaaggcataacccgaagcttgcttatttgaaaatatatgaaaaggatagtaaattt
gaagaagtttttagaaatgttgacctaggtatgagcaatttaggatttgaaatggagaaa
agagagtttaaacctcatcttacattagttagatttagagaagccttgttagatgatgac
attttcccgatttattttaaaggaaagagtagaactgaatcaatcatggataaggttagt
ttatttcagagtattttgatgcctgatggacctatctacaaggaggtgttctcggttaag
ctatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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