KEGG   Tateyamaria omphalii: BWR18_07730
Entry
BWR18_07730       CDS       T04652                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
tom  Tateyamaria omphalii
Pathway
tom02024  Quorum sensing
tom03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BWR18_07730
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BWR18_07730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tom03019]
    BWR18_07730
   03036 Chromosome and associated proteins [BR:tom03036]
    BWR18_07730
Messenger RNA biogenesis [BR:tom03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BWR18_07730
Chromosome and associated proteins [BR:tom03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BWR18_07730
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: APX11585
UniProt: A0A1P8MU63
Position
complement(1554824..1555063)
AA seq 79 aa
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPISLYEGEDAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atggcttcggaccgacagaatttgcaagatgcattcctgaaccacgtgcgcaagaccaag
gtgcccgtgacaatttttttgatcaatggcgtgaaattgcagggcgttatcacgtggttt
gacaacttttgcgtgctgctgcgtcgcgatgggcaaagccagttggtctataagcacgcg
atctcgaccatcatgccgagccagccgatcagcctctatgagggcgaagacgcctcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

Download RDF
DBGET integrated database retrieval system