KEGG   Tetragenococcus osmophilus: C7K38_00295
Entry
C7K38_00295       CDS       T05711                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
too  Tetragenococcus osmophilus
Pathway
too03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:too00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C7K38_00295 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:too03019]
    C7K38_00295 (rnr)
   03016 Transfer RNA biogenesis [BR:too03016]
    C7K38_00295 (rnr)
Enzymes [BR:too01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     C7K38_00295 (rnr)
Messenger RNA biogenesis [BR:too03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C7K38_00295 (rnr)
Transfer RNA biogenesis [BR:too03016]
 Prokaryotic type
  tRNA degradation factors
   C7K38_00295 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB RNase_II_C_S1 DUF3592
Other DBs
NCBI-ProteinID: AYW46943
Position
complement(53768..56101)
AA seq 777 aa
MKETIKTKVLDFMENSSKKSFSMEEIAQHLGLEKSKDFKTLVQTVATMEREQLVDFNKKG
KVKLPAKQNLVEGSFHANERGFGFVTIDSEEDDVYVGKENTNYALDGDLVAIEIIKADDP
AEDRGAEGKVVEIRQRSITQVVGEFQLFSEEEIADTDLYGVITPKAKKLSGFKVLVSAVG
VRPVDGNIVVAEITHYPEKGYSDTLEGIVKNIIGHKDEPGMDILSVLAANHVPTEFSDKA
LEQANQVPDTIDPNNYPERKNRQEQTIVTIDGEGAKDLDDAVSVQKLENGHFFLAVHIAD
VSYYVTEDSPLDKEAFERGTSVYLTDRVVPMIPQRLSNGICSLNPQVPRLAMSCEMEVDE
EGTVVSYDIFPSVIQTNARMTYTAINEILEDENSETMAQYKDLVPMFQSMKELHEILEAM
RTRRGALTFEDNEAQVVVDESGHPLDIVLNQRGVGERMIESFMLCANETIAKHYDQLNLP
FIYRIHEAPDEEKLQQFFDFAATLGILVKNKKGKVSPKELQAVVENAAEKPESMVINMML
LRSMQQAHYSEENVGHYGLAAEYYTHFTSPIRRYPDLLVHRLIRSYWKDASKQQQGRWSK
KIPEIAQHSSDMERRAVDCERDVDSMKKAEYMQDHIDEEFEGVISSVVKFGFFVELPNTI
EGLIHVSDLKNDYFQFIESQLALVGEHTGQTYKIGQQVTVRVTKANPETREVDFELAGNS
QTSQPKAENGRNRKQRRKKQSEPASKQDNKGKKDKKKNKKKKKPFYKDAPKNKRNKK
NT seq 2334 nt   +upstreamnt  +downstreamnt
atgaaggaaacaataaaaacaaaagttttagattttatggaaaacagctctaaaaaaagt
ttttccatggaagaaattgcacaacatttagggcttgaaaaaagcaaggattttaaaact
ctagtacagacagtagcaacaatggaaagagaacaactcgttgattttaataaaaaaggg
aaagtaaaacttcctgctaagcaaaatttagtcgaaggaagtttccatgcgaatgaacga
ggatttggatttgtgaccattgattctgaagaagatgatgtatatgttggaaaagagaat
acgaactacgctttagacggtgacttagtagctattgagattataaaggcagatgatcct
gctgaagaccgaggcgcagaaggaaaagttgttgaaataagacaaagaagtattacccaa
gttgtgggtgaattccaactattttctgaagaagaaattgccgataccgatttatacggt
gttattaccccaaaagccaaaaaattatccggctttaaggttttggtttcggctgtaggt
gttcgaccggtagatggcaatattgtagtggctgaaattactcactatcctgaaaaaggt
tattcggatactttagaaggtatagtcaaaaacattattggtcataaagacgagccggga
atggatattttatcagtattggcggcaaatcatgttcctacagaattttcggacaaagct
cttgaacaagccaatcaagttcctgacaccattgaccccaataattatcccgagcgcaag
aatcgtcaagaacaaacgattgtaactattgatggagaaggcgctaaagatctagatgac
gcggtttcagttcaaaaactagaaaacggacacttctttttagccgtgcatatcgcagat
gtgtcttattatgtgacagaagatagtccgttggataaagaagctttcgaacgagggaca
agtgtgtatttaacagaccgtgtcgttcctatgatacctcaacgattatctaatggtatc
tgttcgttaaatccgcaagtgccaagacttgcaatgagttgtgaaatggaagttgatgaa
gaagggacagtcgtctcttatgatatttttccaagtgttattcaaacgaatgcgcgcatg
acttatacagccattaatgaaattttagaagatgagaattcagaaacgatggctcaatat
aaagatttggtcccaatgtttcaatcgatgaaagagctccatgaaattttagaagctatg
agaactagacgtggtgctttaacttttgaagataacgaagcacaagtagtggttgatgaa
agtggccatcctttagatattgttttaaaccaacgcggcgttggtgaacgcatgattgaa
tcttttatgctttgtgccaatgaaacaattgctaaacactatgatcaattaaatctccca
tttatttaccgtatccatgaagcaccggatgaagaaaagctgcagcagttttttgatttt
gcagctacgttggggattctggtgaaaaataaaaaaggaaaagttagtccaaaagagtta
caagcggtagtagaaaatgcagctgaaaagcctgaaagtatggttattaacatgatgctt
ttaaggagtatgcaacaagctcattactctgaagaaaacgttggtcattatggattagct
gctgagtattatacacatttcacttcaccaatccgtcgttacccggatttgttagtgcat
cgcttaatacgttcgtattggaaagatgcttcaaaacaacagcaagggcgttggtctaaa
aagattcccgaaatcgcacaacatagttcagatatggaacgtcgcgcagtagattgtgaa
cgtgatgttgattcaatgaaaaaagccgaatatatgcaagatcatatcgatgaagaattt
gaaggcgtgattagttcggttgttaagtttggattttttgttgaattaccaaatacaatt
gaaggtcttattcacgtaagtgatttgaaaaatgattatttccaatttattgaaagtcag
ttagctcttgttggcgaacataccggtcaaacatataaaattggccagcaggtgacagtg
cgagtaactaaagcaaatcctgaaacaagagaggtcgactttgaactagcaggcaattct
caaacgagccaacccaaagctgaaaatggacgaaatcgtaagcaacgtagaaaaaaacaa
tcagaacccgcatcgaaacaagataataaagggaaaaaagataaaaaaaagaataagaaa
aagaaaaaacctttttataaagacgcaccaaaaaataaaaggaataaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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