KEGG   Thermodesulfobacterium geofontis: TOPB45_1132
Entry
TOPB45_1132       CDS       T01547                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
top  Thermodesulfobacterium geofontis
Pathway
top03030  DNA replication
top03410  Base excision repair
top03420  Nucleotide excision repair
top03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:top00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TOPB45_1132
   03410 Base excision repair
    TOPB45_1132
   03420 Nucleotide excision repair
    TOPB45_1132
   03430 Mismatch repair
    TOPB45_1132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:top03032]
    TOPB45_1132
   03400 DNA repair and recombination proteins [BR:top03400]
    TOPB45_1132
Enzymes [BR:top01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TOPB45_1132
DNA replication proteins [BR:top03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TOPB45_1132
DNA repair and recombination proteins [BR:top03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TOPB45_1132
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TOPB45_1132
   MMR (mismatch excision repair)
    DNA ligase
     TOPB45_1132
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TOPB45_1132
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 HHH_3 UPF0758_N RlmA_N HMBD ERp29
Other DBs
NCBI-ProteinID: AEH23220
UniProt: F8C669
Position
complement(1130978..1133038)
AA seq 686 aa
MPEEAKEKREIPQEIIEKVKKLREEIEYHNYRYYVLDSPVISDAEYDALMRELRRLEEMY
PELITPDSPTQRIGFKPAEGFKEVPHAEPMLSLDDAMNEEEVIEFDKRIKRFLGLPEETP
IEYTVEPKIDGLAVELVYENGSLSIGATRGDGYVGEDVTNNIKTIPTVPLRLRKFTEDAP
DIPPRIDVRGEVYMNKDEFKRINEERIRKGELPFANPRNAAAGSLRQLDPSITAKRKLDI
FYYGVGKVEGYKFKTQWEILQTLPKWGLKVNPYVKLVKDIKEAINYHHHIERIRDTLPYE
IDGVVIKVNDLSLWEKLGTKARSPRYALAYKFQPTQVTTQLLDVVFQVGRTGAITPVAVL
KPVQIGGVIVERATLHNEDFIKNLDIRIGDWVLVQRAGEVIPEIVMPIKERRTGQEKEII
FPTHCPICGTKLIKKPEEAIWRCPNKNCYAQAVRKILHFASRNAMNIEGLGEKVARDLVD
RGLVQNVADLYYLKWEDFMKLPGFAYKKAKNLYEAIQKSKKTTLGRFIYALGIRHVGEAM
AQMLAEKFKSLDKLMNASMSDLLSIPGVGYEVAKSIVEFFKNEENRKMIQRMLDAGVTFV
EEEKEEKPKILEGLTFVFTGTLKSMTRDEAKEIVRELGGKTTDSVSKNVDYVVAGDNPGS
KYQRALQLGVKIINEEEFLKLIGKAK
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgcctgaagaagcaaaagaaaaaagagaaattcctcaggaaataattgaaaaggttaaa
aaattaagagaagagattgaatatcataattacagatattatgttcttgattctcctgtt
atttctgatgctgaatatgatgctctaatgcgagaattaagaagattagaagaaatgtat
ccagaattaattacacctgattctccaacccaaagaattggttttaaacctgcagaggga
tttaaagaggtacctcatgcagagccaatgctttctttagatgatgctatgaatgaggaa
gaagttattgaatttgataaaagaattaaaagatttttgggactacctgaagaaactcct
atagagtatactgttgagcccaaaatagatggtcttgcagtagaacttgtttatgaaaat
gggagtttatcaataggggcaacaagaggagatggatatgttggagaagatgttaccaat
aatatcaaaactatccctactgttcctctaagattaagaaaatttactgaagatgcacca
gatattcctcctcgtattgatgtaagaggagaagtatatatgaataaagatgaatttaaa
agaataaatgaagaaagaattcgcaaaggagaacttccttttgccaaccctcgtaatgcc
gcagcaggatctttaagacaacttgatccctcaattacagcaaaaagaaaacttgatatt
ttttattacggagtgggaaaggttgaaggatataaatttaaaactcaatgggaaatatta
caaactcttcctaaatggggattaaaagttaacccttatgtaaaattagtgaaagatata
aaagaagctatcaactatcatcatcatatagaaagaataagagatactttaccttatgaa
atagatggagtggtaataaaggttaatgatctttctctctgggaaaaattaggaactaag
gctcgttcaccaagatatgctcttgcttataaatttcaacctacccaagtaactactcaa
cttttagatgtagtttttcaggtaggaagaacaggtgctattactcctgttgcggtatta
aaacctgttcaaataggtggagttattgttgaaagagcaacccttcataatgaagatttt
attaaaaatttagatattagaataggtgattgggtacttgtccaaagagcaggagaagtt
ataccagaaatagtaatgcctattaaagaaagaagaactggccaagaaaaggaaataata
tttcctactcactgccccatttgtggaacaaaactcattaaaaaaccagaagaagctatt
tggagatgccctaacaaaaattgctatgctcaagcagtaagaaaaattcttcattttgca
agtagaaatgctatgaatatagaagggcttggagagaaagtagcaagagatcttgtagat
agaggtctggttcaaaacgtggcagatctttattatttaaaatgggaagattttatgaaa
cttccaggttttgcttacaaaaaagctaaaaatctttatgaggctatacaaaaaagtaaa
aaaactactttgggaagatttatctatgctcttggaataagacatgtaggagaggctatg
gcacaaatgcttgctgaaaaatttaaaagccttgataaattgatgaatgcttctatgtct
gatttgttaagtatccctggagtaggttatgaagtagctaaatcaatagttgaatttttc
aaaaatgaagaaaatcgcaaaatgattcaaagaatgcttgatgcaggggttacttttgtt
gaagaagaaaaagaagaaaaacctaaaattcttgaggggctaacctttgtctttactgga
accttaaaatctatgaccagagacgaagcaaaagaaatagtaagagagcttggagggaaa
accacagattcagtttctaaaaatgttgactatgttgtagcaggagataatcctggatct
aaatatcaaagagctttacagcttggtgttaaaataattaatgaagaagaatttttaaaa
ttaattggtaaagcaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (82)   
   KEGG ORTHOLOGY (1)   
   RefGene (79)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (113)   

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