KEGG   Thalassolituus oleivorans R6-15: R615_12380
Entry
R615_12380        CDS       T03056                                 
Name
(GenBank) 3'-5' exoribonuclease
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
tor  Thalassolituus oleivorans R6-15
Brite
KEGG Orthology (KO) [BR:tor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tor03016]
    R615_12380
Enzymes [BR:tor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     R615_12380
Transfer RNA biogenesis [BR:tor03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    R615_12380
SSDB
Motif
Pfam: RNB CSD2 OB_RNB Pep_deformylase CSD
Other DBs
NCBI-ProteinID: AHK16381
Position
2657213..2659144
AA seq 643 aa
MLDKNALSQLKSLKQEIQQSTPRFEGTVRATAGRFGFVNTEDGQSFFLSPEEMEKVLPGD
VVAFRVEPAGEGKEQAIVESLISTVQNEFLGRYVVRGKGHFVEADHPTLNRWIFVPPAKR
LQAKDGDLVKAHISQHPFPKGKAQADLDAVIGNDQTPHIERLFVQQKFGLSDAISDAAQA
QVDALCAQGVDTIANERSDLTHLPFVTIDSAGTRDIDDALYAEAQSNGWTLWIAIADPAA
LIEPGTPLDELAKTRATSAYFPDQVLPMLPPALSEQLCSLQAGELRLAMVVELRLSQDGD
VRQTTLHNAIIKSRAKLTYNQVSHLIAGECDEIAAELQGPVLHLSDCAKALAANRLRNCL
VMEDRPDFKLLVDEDGHVTDIVRIERNDAHRLVEECMLVCNRSVALWLKERNAGMFIEHA
GVRSERIGEVAALLRENLALEAKPKFDNLEEYVQLMQQAAEAECELPLRAIIGRQQERSR
FGLEGKPHMGLGFPCYTTFTSPLRKYNDLMIHRTVRALLNGENIEQASQELLDAVQQAQT
SARIAANQTEQWMKLVWLNAKDKDAVYNATIVHMNSSSITVRLNDNGIEGTIDRRKVKGD
WTFDSKTFTHRNAEQCFMLGQALNVRINEVRPYNRQVTFVIVE
NT seq 1932 nt   +upstreamnt  +downstreamnt
atgcttgataaaaacgcactatcccagctgaagtctctgaagcaggaaatccaacaaagc
acccctcgattcgaaggtactgttcgcgccactgcgggacgtttcggttttgtgaatacc
gaggatggtcaaagtttctttttatcccccgaagagatggaaaaagtattgccgggagat
gttgttgcatttcgcgtggaaccggcaggcgaaggtaaagaacaagccatcgttgaaagc
ttaatcagcacagttcaaaacgaatttttaggacgctatgtcgttcgcggtaaaggacat
tttgtcgaagctgatcatccaacactaaatcgttggatatttgtaccacccgccaaacgc
ttacaagcaaaagacggcgatcttgttaaagcacatatcagccagcatccatttccgaaa
ggtaaagcccaagccgatttagatgcggttattggtaacgatcaaacaccgcatatcgaa
cgcttatttgtgcagcagaagtttggcctcagtgatgccatctccgatgcagcccaagca
caagtagacgcgttatgcgcccaaggcgttgatacgattgccaatgagcgcagcgattta
acccacctaccgtttgtgaccatcgactcagcaggaacgcgcgacatagatgatgccttg
tacgctgaagcgcaaagcaacggctggacattatggattgctatcgccgatccagcagca
cttatcgagccgggaacgccacttgatgaattagcaaaaacacgtgcaacatcggcgtac
tttcctgatcaagtactgccaatgctgccacccgcattatcagagcaattgtgctcattg
caagctggcgagctgcgcttggctatggtggttgaattacgcttgagccaagatggcgat
gtgcgtcaaacaaccttacacaacgcgattatcaaaagccgagcaaagctgacgtacaac
caagttagccatttaattgctggcgaatgtgatgagattgccgctgaactgcaaggcccg
gtgttacatctatccgactgcgccaaagcactggcagctaaccgcctgcgcaactgcttg
gtgatggaagatcgcccagactttaagctcctggtcgatgaagatggccatgtaaccgat
atcgttcgtattgagcgcaacgatgcacatcgtttagtcgaagaatgtatgttggtttgc
aatcgctcggtcgccttgtggttgaaagaacgcaacgctggtatgttcatagaacacgca
ggcgttcgtagcgaacgtatcggtgaagtcgccgcgctattacgcgaaaatctagcgctt
gaagccaagccgaaattcgacaacctcgaagaatacgtacaactaatgcaacaagcggcc
gaggctgaatgcgaactaccgttacgcgcgattatcggtcgccaacaagaacgcagccgc
tttggccttgaaggcaagccacacatgggcttgggcttcccttgctataccaccttcacc
tcaccactgcgcaaatacaacgacctgatgattcatcggacagtacgtgctttgcttaat
ggcgaaaatatcgagcaagcatctcaagaattactcgatgccgttcaacaagcacagact
tctgcacggatagcagcaaatcaaaccgaacaatggatgaaacttgtttggttaaatgcg
aaagataaagatgcggtttataacgcgacaattgtgcatatgaatagcagctcaataacg
gtgcgtttaaatgacaatggtatcgaaggcactattgatcgccgtaaagttaaaggtgat
tggacatttgatagcaaaacatttactcatcgcaatgcagagcaatgctttatgcttgga
caagcactcaatgtgcgtattaatgaggttcgcccttataatcgccaagtaacgttcgta
atagtggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system