KEGG   Theileria orientalis: TOT_030000665
Entry
TOT_030000665     CDS       T03460                                 
Name
(RefSeq) DNA-directed RNA polymerase
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
tot  Theileria orientalis
Pathway
tot03020  RNA polymerase
tot03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TOT_030000665
  09124 Replication and repair
   03420 Nucleotide excision repair
    TOT_030000665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tot03021]
    TOT_030000665
   03400 DNA repair and recombination proteins [BR:tot03400]
    TOT_030000665
Enzymes [BR:tot01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TOT_030000665
Transcription machinery [BR:tot03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     TOT_030000665
DNA repair and recombination proteins [BR:tot03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TOT_030000665
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R RNA_pol_Rpb1_7 dNK Tom7
Other DBs
NCBI-GeneID: 20715827
NCBI-ProteinID: XP_009691704
UniProt: J4C8U6
Position
3:join(1463838..1467415,1467533..1467551,1467636..1468976)
AA seq 1645 aa
MTTVADLNKPFSPCDLKKIRSIEFGILDPEIIKRMSVCEITLTELYREGVPQTGGLNDLR
MGTTDPRHVCTTCRMDLKYCPGHFGHIVLAKPMYHYGFMPTIIKILSSVCFNCSKLRLDK
EDPKMRNILKIPPGAMRLNYIATMSKPITNCQFKSQSVSKVQGCGYPQPIFTKEGPNLMI
KFTQKQREVLEEAEEPCDDIQRPLAPEEAFKVLKGITTEDMKYLGFVPERSQPSWLILNV
LPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQEMCQLLQFH
ITTLFDNDIPGMPVASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNI
PIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVEVGPHDWPGAKYIIREDGTRFDLRHVK
KSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTTPYN
ADFDGDEMNLHLVQSHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDT
FLTRDELMSLLIWIPYWDGKLPQPAIFFPKNLWTGKQVISVLLTFNQAQGITNINLIRDG
SIKLEKDNLNCSVNDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLT
TLQKVVNNWFLQVGFTVSCSDICCSTTTLNKVSKILDKSKKEVQKLVLQAQKGKLKCQPG
KSLFESFEARVNKELNDAREQSGSVVASSLNISNNILSMVNSGSKGSTINISQIIACVGQ
QNVEGKRIPFGFKDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDT
ACKTSETGYVQRRLMKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAEYIEDQQIDLMT
MDDEEMNRRFNHDFRSESYGLGWILNEEIRNTILSDFSQQVILVEEYQKLVDLKKMICEE
IFPNGDHAQHLPVNIKRILEYATTQFPATTSSRNQLNPVDIALRTNKLLENMIIITTSGP
TDVLSEEAQQNATILIKAHLRCNLNSRYLMEYVQIGNLALDWVYGEVERCFFKAIANPGE
CVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVRTPSLTIYLDA
NISKDQERAKEMQTQLEYTNFERLVENYSVIYDPVVNSTIVKEDYEWVRDYYDEFSNGEE
ERMLQLVETEAEFLNKFMTDVLSNIKLRGVKGITKVYMREETFTRYNGATGSFDRVSQWV
LDTDGCNLENVLPIPCVEYTKTFSNDVSEIFNVFGIEAARRALLREIRAVISFDGAYVNY
RHLSLLCDIMTQKGYLMSITRHGLNRADRGPLVKCSFEETLETLLSAAAFSEVDPLRGVT
ENVVVGQLSPYGTGCFDIMIDELKLRDANQSSATMADSVMGLISPDSTPMSPTTPASRIN
SMLSPIPFSPSYTSLMMSPSVAGLGPSTPGLMVDTYALGGSFSPTSPGSPTSPTSPMSPT
SPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPA
YSPTSPAYSPTSPAYSPTSPAYSPTSPNLGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS
PTSPNVPYSPADPFSPNPFQEDPQE
NT seq 4938 nt   +upstreamnt  +downstreamnt
atgaccacagtggcagatttaaataaaccattctcgccgtgcgatctgaagaagatacgc
tcaatagagtttggaatactggatccagaaatcatcaagaggatgtcagtatgcgaaatc
accctgacggaactgtaccgcgaaggtgttccacaaacaggaggattgaacgacctgaga
atgggaacgacggaccctcgacacgtatgtacaacgtgccgtatggacctaaagtattgc
ccaggacatttcgggcacatagtcttggcaaaaccaatgtaccactacgggtttatgccg
acaatcattaagattctcagcagcgtgtgcttcaactgtagtaagctaagattggacaaa
gaggacccgaaaatgagaaatatattaaaaataccaccaggagcaatgcgactcaactac
atagcaacaatgtctaagccaatcacaaattgccagtttaaatcacagtcagtatcgaag
gtccaaggctgcggatacccacagccgatattcacaaaggaaggaccgaacctgatgatc
aaattcacacaaaaacagagagaagtgctggaggaagcagaggagccgtgcgacgacata
caaaggccgctggcgccggaggaggcgttcaaggtgctgaaggggatcacgacggaggac
atgaagtacctgggattcgtgccggaaaggtcgcaaccgtcatggcttatcctaaacgtg
ttgccagtgccgccgccagcagtgaggccgtacgtgcagtacggaagcgaccgcagcgaa
gatgacctgacgctgaagctgctggacgtgctgaagacgaacaacctgatcaagagacac
gacaaaagagcaacagcaccgcacataatacaggaaatgtgccagctgctgcagttccat
atcacgacgctgttcgacaacgacatcccaggaatgccagtagcctcgacgaggtcgaag
aagccgatcaagtcgataagagcaagacttaaggggaaggagggaaggctgagagggaac
ctgatgggaaagagagtggacttctcagcaagaacagtgatcacaggagacccgaacata
ccaatagacacgataggagtgccgaagagcatagcaatgacgctgacgttctgcgaaact
gtaaactcgctgaactacgagagtctgaggaagaaggtggaggtgggtccgcacgactgg
ccgggagctaagtacataataagagaggatgggacgaggtttgacctgcgacacgtgaag
aagagcagtgagctgcagctggagtacggctacaaggtggagcggcacatgcaggacgga
gattacatcctcttcaacaggcagccctcgctgcacaaaatgagcatcatgggacacaag
gcgaagatactgccgtactcgaccttcaggctcaacctgagcgtgacgacgccgtacaac
gcagacttcgacggagacgaaatgaacctgcacctggtgcagtcgcacgaaacgagagcg
gaggtgaagcacctgatgttggtgccgaagcagatcgtatcaccgcaggggaacaggcca
gtgatgggaattgtgcaggactcgctgctggcagtctcgaagttcacgaagagagacacc
ttcctgacgcgcgacgagctgatgtcgctgctgatctggataccctactgggacgggaag
ctgccgcagccagcaatcttcttcccgaagaacctgtggacgggaaagcaggtgatctca
gtgctgctgacgttcaaccaggcgcaggggatcacgaacataaacctgatcagagacgga
agcataaagctggagaaggacaacctgaactgcagcgtgaacgactcgagagtcataatt
aggaaaaatgagcacctgagcgggatcatctgtaagaagacagtgggctgcagctcaggc
tcgctgatacacatcctgtggcacgaggcgggtccggagaagtgcagagacttcctgacg
acgctgcagaaggtagttaacaactggttcctgcaggtgggcttcacagtctcgtgcagc
gacatctgctgctcgacgacgacactaaacaaggtgtcgaagatcctggacaagagtaag
aaggaggtgcagaagctggtgctgcaggcgcagaaggggaagctgaagtgtcagccagga
aagtcgctattcgagtcgtttgaagcacgagtgaacaaggagttgaacgacgcaagagag
cagagcgggagcgtggtagcgtcgtcacttaacatatcgaacaacatcctgtctatggta
aactcgggctcgaaggggtcgacgataaacatatcgcagatcatagcgtgcgtgggtcag
cagaacgtggaggggaagagaatccccttcggcttcaaggacagaagtctgccgcacttc
atcaagcacgactacgggcctgagagcagaggcttcgtgtcgaacagttacctgagcggt
ctgacgccgcaggaaatgttcttccacgcaatgggaggaagagaggggatcatcgacacg
gcgtgcaaaacaagtgagacggggtacgtgcagagaaggctgatgaaggcaatggaagac
gtgatggtgcagtacgacagaacagcaagaaacggaaacggagagatcctgcagttcctg
tacggagaagatggcatgggagcggagtacatcgaggaccagcagatagacctgatgacg
atggacgacgaggagatgaacagaaggttcaaccacgacttcagaagtgagtcgtacgga
ctgggctggatcctgaacgaggaaataagaaacacgatactgagcgacttctcgcagcaa
gtaatcctggtggaggagtaccagaagctggtagacctgaagaagatgatctgcgaggag
atcttcccgaacggagatcacgcgcagcacctgccggtgaacataaagaggatcctggag
tacgcgacgacgcagttcccggcgacgacgagctcgagaaatcagctgaacccagtggac
atagcactgagaacgaataagctgctggaaaacatgatcatcattacgacgagtggccct
accgacgtgctgtcggaggaggcgcagcaaaatgcgacgatcctgatcaaggcgcacctg
cgctgcaaccttaacagcaggtacctgatggagtacgtgcaaataggaaacctggcgctc
gactgggtgtacggagaagtggagcgctgcttcttcaaagcaatagcgaacccgggcgag
tgcgtaggagcaatagcagcgcagtcgataggagagccggcgacgcagatgacgctcaac
acgttccacttcgcaggagtgagcagcaagaacgtgacgctgggactgccgcgcctgaag
gagcttatcaacgtggtgacgaacgtgaggacgccctcgctgacgatttacctggacgcg
aacataagcaaggaccaggagagagcgaaggagatgcagacgcagctggagtacacgaac
tttgagcgcctggtggagaactacagcgtaatatacgacccggtggttaacagcacgatc
gtgaaggaggactacgagtgggtgcgagactactacgacgagttcagcaacggagaggag
gagcgaatgctgcagctggtggaaactgaggcggagttcctgaacaagttcatgacggac
gtcctgagcaacattaagctgcgcggagtgaaggggatcacgaaggtgtacatgcgcgag
gagacattcacgcgctacaacggagcgacgggcagcttcgacagagtctcgcagtgggtg
ctggacacggacggctgcaacctggaaaacgtgctcccgataccatgtgtggagtacacg
aagacattcagcaacgacgtgagcgagatcttcaacgtattcggaatcgaggcggcacgg
cgcgcgctcctgagggagatcagagcagtgatctcgttcgacggagcatacgtcaactac
aggcacctctcgctgctctgcgacatcatgacgcagaaggggtacctgatgagcatcacg
aggcacgggctcaacagagcggaccgagggccgctggttaagtgcagcttcgaggagacg
ctggaaacgctgctttcagccgcagcattctcggaggtggacccgctgcgcggcgtgacg
gagaacgtggtcgtgggacagctctcgccctacggcacgggctgcttcgacatcatgatc
gacgagctgaagctgcgcgacgcgaaccagtcgagcgcgacgatggcggactcggtgatg
ggcctgatctcgccggactcgacgcccatgagtccgacgacgccggcgagcaggatcaac
tcgatgctctcgccgatccccttcagcccctcgtacacgtcgctgatgatgtcgccgagc
gtcgcggggctgggcccgagcacgccgggcctcatggtcgacacgtacgcgctcggcggc
agcttcagcccgacctcgccgggctcgcccacgagtcccacgagcccgatgagtccgact
agcccggcctacagcgttacgagtccgacctacggggcggcggcgagcccgacgtacctg
gccgcgtcgccgtcctacagcccgacctcgccagcgtactcgcccacgtccccggcctat
tcgccaacgagcccagcgtactcgccgacatcgccctcgtactccccgacgagtccggct
tactcccctacttcccctgcctacagtccgacttctcccgcgtattcgccgacgagtccg
gcctacagtcccacgagtcctaacctgggatacagtccgacgtccccagcatattctccg
acgagtcccgcgtactcgccgacatctccggcctacagtccgacctcgccagcttacagt
cccacgagtccgaacgtgccgtattcgccagcggatccgttctcgccaaacccgttccaa
gaagacccccaggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (25)   

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