KEGG   Treponema pallidum subsp. pallidum Nichols: TP_0116
Entry
TP_0116           CDS       T00016                                 
Name
(GenBank) excinuclease ABC, subunit B (uvrB)
  KO
K03702  excinuclease ABC subunit B
Organism
tpa  Treponema pallidum subsp. pallidum Nichols
Pathway
tpa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TP_0116
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpa03400]
    TP_0116
DNA repair and recombination proteins [BR:tpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TP_0116
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      TP_0116
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_16 UB2H DUF6101 AAA_22 DUF5713 AAA_30
Other DBs
NCBI-ProteinID: AAC65106
UniProt: O83154
Position
132863..134869
AA seq 668 aa
MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTL
VISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINR
MRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQY
ERNDAVLECGRFRVRGDVIEIFPAYLEEFYRIECDWDRVVRIRRIHPVSGAVLREFEELT
VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY
CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI
DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQSVQIVEQLIRPTGLLDPCI
EVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIETI
ERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAA
RNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQEV
KKDAARVQVAPLLRAADADVRTHAARKKMVQALRLHMKVCARELRFEEAALIRDKILQLQ
RQDEQNGV
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaaagaatttaaattacacgcttctttccaacctgcaggcgatcagattgccgcaatc
gacgcactcgtgcgtggcttgcatgcgggggcgcgttttcaaacgctcaagggtgttacc
ggttcggggaaaacgtttacagttgcaaacgttattgcacgcgtgcaaaaaccgacgctt
gtcatcagtcataataaaacgctctctgcacaattgtaccgggaatttaaaggttttttc
ccagacaatgcggtggagtattttgtgtcgtactacgattattatcagcctgaatcgtat
gtccctgctcgtgatctctacattgagaaagatgcttctatcaatgcagagataaataga
atgcgtttatctgcaacgtttagtctcatggaacgtcgtgatgttattgtagtcgcaact
gtttcgtgtatttacggtcttgggttgcctgaatcctggcgtgatctgcgtatccacgtg
gaagtcaaccagtgtcttgatcttgaagatctcaagcggcaacttgtatctctgcaatac
gagcgtaacgacgcggtgctcgagtgcggtcgcttccgagttcggggagacgttattgaa
attttccctgcgtatttagaagaattttatcgtatcgagtgcgattgggatcgagttgtt
cgtatccgtcgcattcatcctgtaagcggtgctgttctaagggaatttgaagaacttacc
gtttaccctgcaaagcattttgtacttaaagaggatgcaatccctcgcgccatggaccgt
attagacaagaactcgatgaacggttggtacaattaactcaagagaataagcttgcagaa
gcggcacgtttaaaaacgcgcacagaatacgatcttgaaatgctcggagagatggggtat
tgccacggtatagaaaattattctgcgccgattgcaggtagaaaatctggtgaaccgccg
gtgacgcttcttcattattttccaaaggattttgtgctctttgttgatgaaagtcacgta
acacttccgcagcttggtgcaatgtatgaaggagatcgggtgcgtaaacagaatctcatc
gattttggctttcgcttgccgtgtgcacgagataaccgtccactgaaagattcggaattt
gaggcattgttaaatcaagcagtttttatttctgcaactcctggggtgaaggaacgcaca
cagtctgtgcaaatagttgaacaactgattcgtcccactggacttttagatccatgcatc
gaagtgagaaaaacggatggacaaatagaagatatatgtcagcgggtaaaagcttgtagt
gcgcggaacgaacgtagtttggtgctaacattgacaaaaaaaatggctgaagatttaaca
gattatttcaatggactgggaataaggacaaagtatgttcattcggaaattgaaactatt
gaacgcgtagaaattctcacgagtctgcgtgcgggggaatgtgaggtattagttggaata
aatttattacgagaaggtattgatttgcccgaggtggcattcattgctattttggatgcc
aatatagtcggttttttacgttcgacgacgagtctcatccaaattattggtcgagcagca
cgtaatgctcgcggaactgtggtaatgtacgcggatgcaatcagcgatgcgatgcgtgaa
gcaatagaggaaactgctcgacggagaaagattcagatggcgtataatcgtgctcatggg
attacaccccgtacgattaaaaagtctattgaagatattctggtccgtgagcaggaagta
aaaaaagacgctgcgcgtgtacaggtcgcacccctgttgcgcgcagcagacgcagacgtg
cgcacacatgctgcacgcaaaaaaatggtacaggcgttgcgcctacacatgaaggtttgt
gcgcgtgagttacgatttgaagaggcagccctcatccgagacaaaattttgcaactgcaa
aggcaagacgagcaaaacggggtttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (12)   
   Pfam (12)   
All databases (28)   

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