KEGG   Thermofilum pendens: Tpen_0269
Entry
Tpen_0269         CDS       T00446                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
tpe  Thermofilum pendens
Brite
KEGG Orthology (KO) [BR:tpe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tpe03016]
    Tpen_0269
Enzymes [BR:tpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Tpen_0269
Transfer RNA biogenesis [BR:tpe03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Tpen_0269
 Prokaryotic type
   tRNA splicing ligases
    Tpen_0269
SSDB
Motif
Pfam: RtcB RuvA_N Complex1_LYR
Other DBs
NCBI-ProteinID: ABL77679
UniProt: A1RWU9
Position
complement(237423..238871)
AA seq 482 aa
MAPPLRRITEYLWEIPEKYKPGMNVPGLVIADEVLISKMKEDLTLEQVANVAMLPGIYKY
SIVLPDGHQGYGFPIGGVAAFDAEKGVLSPGGVGYDINCGVRVLSTNLTEQEVRPKLREL
AETLFRKIPSGLGSTSGLRLSHAELDRVLEEGVEWAIERGYGWREDMEHIEEKGRMEGAD
ADAVSNEAKQRGSNQLGTLGSGNHFLEVQRVDKIYDPEVAKVFGIEREGQVTVMIHTGSR
GLGHQVASDYLKIMERVVRKYNMPLPDRELVSVPATSPEAERYFAAMKAAANFAWTNRQV
ITHWVRESFRAVFKTDPDKLGLNVIYDVAHNIAKLEEHVVDGKRVKVYVHRKGATRAFPP
GHPEIPADYKSIGQPVLIPGSMGTASYILVGTQKAMDLTFGSSPHGAGRMQSRAEARRSV
RGQEIKSELESRGIVVRAASLAVVAEEAPDAYKDVDRVVMVADAVGIARKIVRMTPIAVV
KG
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggctccgccacttaggaggatcaccgagtacctatgggaaataccggagaagtacaag
cccggcatgaacgtgccggggctcgtcatagcggatgaagtgttaatatcgaagatgaag
gaggatttaacgctcgagcaggtcgctaacgttgccatgttgccgggcatctacaagtac
tctatagttcttccagacggccaccagggttacggcttcccaataggcggcgtcgccgcg
ttcgatgcagagaaaggcgtgcttagccccggaggcgtaggctacgatatcaactgcggc
gtaagagtcctgtccacgaaccttacggagcaggaggttaggccgaaactcagggagctc
gcagagacccttttcaggaagatcccctcggggcttggaagcacgagtggtttaaggctg
agccacgcggagctggaccgcgtactcgaggagggggtcgagtgggctattgaaagaggc
tacggctggagagaggacatggagcatatagaggagaaggggagaatggagggcgcagat
gcagacgcggtgtccaacgaggccaagcagaggggtagcaaccagctgggcacgctgggt
agcgggaaccacttcctggaagtccagagggttgacaaaatctacgaccccgaggttgca
aaggttttcgggattgagagggagggacaagtaaccgtaatgatacacacaggtagcagg
gggcttggacaccaggttgcaagcgactatctgaagataatggagagagtcgtaagaaag
tacaacatgccgctaccggacagggagcttgtatccgtgccggcgacgtccccggaggcc
gaaaggtacttcgcagccatgaaggccgcggcgaactttgcctggacgaataggcaggtt
atcacacactgggttagggaaagcttccgagcggttttcaagacagacccggataagctc
ggtctcaatgtgatctacgacgtagctcacaacattgccaagctcgaggagcacgtggtg
gacggtaaaagagtgaaagtctacgttcacaggaagggggctacgcgggcctttccaccc
gggcacccagagatccccgcagactacaaatccataggtcaacccgtcctgatacccggc
tctatgggtactgcgagctacatactcgtaggaacgcagaaagccatggatttgacgttc
ggctcctctccgcacggcgctggaaggatgcagagccgcgctgaagcgcgtagaagcgtg
aggggacaggagataaagtccgagcttgagagtagaggtatagtggttagggctgcgagc
ctagctgtcgtcgccgaggaggctccagacgcgtacaaggacgtggacagagtagttatg
gtcgcggatgcagtcggcattgctaggaagatagtgaggatgacgcccatagcagtggtg
aaaggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (36)   

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