KEGG   Thermofilum pendens: Tpen_0690
Entry
Tpen_0690         CDS       T00446                                 
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
  KO
K03124  transcription initiation factor TFIIB
Organism
tpe  Thermofilum pendens
Pathway
tpe03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tpe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Tpen_0690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpe03021]
    Tpen_0690
Transcription machinery [BR:tpe03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     Tpen_0690
 Prokaryotic type
  Archaeal type
    TFB
     Tpen_0690
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon TMP_3 Ribosomal_S27e zf-ribbon_3 Sigma70_r4 HTH_Tnp_ISL3 Zn_Tnp_IS1595 Trm112p DUF2752 Auto_anti-p27 HTH_AsnC-type zinc_ribbon_4 A2L_zn_ribbon Zn_Tnp_IS91 Lar_restr_allev LysW-like_globular OrfB_Zn_ribbon GerE FtrD-like DUF5816 Prim_Zn_Ribbon DZR
Other DBs
NCBI-ProteinID: ABL78092
UniProt: A1RY12
Position
complement(640039..641022)
AA seq 327 aa
MGFGRESMVEERKENVNPEDSEEERELRCPNCGSTRLIYDATRGEIICANCGYVMSEREI
DQGAEWRAFTPEEREKRSRVGAPISRYGVESLVTDIDWGGRDAAGREISLRKRIEMLRLR
KWQVRARAQSSMERNLAQAVIELERLGAQLGLPKAVLDRALDIYKSALDSNLVRGRSIES
VMAAAVYAACREMRLPRTLDEIALYTRAGRKDVARCYRLLLREASLKVPLPNAADFVPRI
GSLLRLSGATIKRAMEIIDQARNAGLTAGKDPAGLAAAAIYIAALQNGEMRTQKEVARAA
KVTEVTVRNRYKELVKKLDIKLPVSKK
NT seq 984 nt   +upstreamnt  +downstreamnt
atgggtttcgggcgtgagagtatggttgaggaaagaaaagagaacgttaatccggaggat
tctgaggaagaaagagagctacgatgccctaactgcgggagcaccaggctaatctacgat
gctacgagaggggagattatatgcgcgaattgcggctacgtgatgagcgaaagggagatt
gaccaaggagcggagtggagggcattcactccagaggagagggagaagagaagcagggta
ggagccccgatctccaggtatggtgttgaaagccttgtcacagatatagactggggtgga
cgggacgctgcgggccgggagataagccttaggaagagaatcgagatgctacggcttagg
aagtggcaggtacgcgccagagctcagagctcaatggagagaaacctcgcccaggcagtg
atagagcttgagaggctgggagcacagctgggtcttcccaaagcagtcctggacagggct
ctcgacatatacaagagcgcactggacagtaacctggtacgcggaagatcgatcgagtcc
gtgatggcagcagcggtctatgcagcatgcagagagatgcggcttccgaggacgcttgac
gagatagcgctctacaccagagcaggcaggaaggacgtcgctcggtgctataggttgctc
ttgagagaggcatccttaaaggtgcccctacccaacgccgccgacttcgtgccgagaata
ggttccctgctacgcctctccggagctacgatcaagagagcaatggagataatcgaccag
gccagaaacgctggtctaaccgctggtaaggaccccgccgggctggcggccgccgcgata
tatatcgcggcgcttcagaacggagagatgcggacacaaaaggaggttgcgagggcagcc
aaggtcactgaggtcaccgtgaggaataggtacaaggagctagttaaaaaactcgacata
aagctccccgtatctaagaagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (23)   
   Pfam (23)   
All databases (42)   

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