KEGG   Treponema pedis: TPE_0960
Entry
TPE_0960          CDS       T02803                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
tped  Treponema pedis
Pathway
tped03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tped00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPE_0960 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tped03019]
    TPE_0960 (pnp)
   03016 Transfer RNA biogenesis [BR:tped03016]
    TPE_0960 (pnp)
Enzymes [BR:tped01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     TPE_0960 (pnp)
Messenger RNA biogenesis [BR:tped03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TPE_0960 (pnp)
Transfer RNA biogenesis [BR:tped03016]
 Prokaryotic type
  tRNA degradation factors
   TPE_0960 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 TetR_C_5-like
Other DBs
NCBI-ProteinID: AGT43456
UniProt: S6A3D1
Position
complement(1042099..1044192)
AA seq 697 aa
MKQRVTYKIGEYDLILETGHLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVD
YNEKYYAAGKIPGGFIKRESRPKDKEILVSRLIDRPMRPLFKKEFGREIQLIPTCISTDM
INPPDILAVIASSAAVHISDIPFDGPVAAARVAFKNGEYIINPTFEQIETADMEIVVAGT
KDGITMVEGGANEVSEEVMLTALEKAHEMIKALCKIQEDLRGLAGKEKLPLVPLEVELEN
KQAIYDEAFPRLSKTLYLSTKMERREESDKVKEEIAEKYAEQLEDEIQLKLFNALFEEME
YNILRKNILDKGLRVDGRGTKNIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFD
EQIYDDIEGDRRENFILHYNFPPFSVGEVGRLGTGRREIGHGNLAHRSLYPMIPSREKFP
YTVRVVSEILESNGSSSMATVCSGTLSLLHAGVPMKKPVAGIAMGLITEGNDRYAILSDI
LGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVSSEIMKNALAQAKEGRLHILGIMNQTI
SVPSSELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISEKYNVTINTENDGTVTIYGKD
GSSDLKGAKSIVKGITSDPEVGTVYDGVVKKIMDFGAFIEIMPGKEGLCHISKLSRSRVE
KVSDVLKEGQEIPVKLLEIDKIGRLNLSYIDALEEKK
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgaaacaaagagttacttataaaataggagaatacgatttaatacttgaaaccgggcat
ttggccaaacaggctaacggttcaatttatgcggaatatgcaggttccgctatcttggct
acaatttgcgcgtccggacaagcccaggaaggtttggattatgtgcctttaactgttgat
tataacgaaaaatattatgccgcgggaaaaatcccgggcggatttataaaaagagaaagc
cgacctaaagataaagaaattttagtttcgcgccttatcgacagacctatgcggccctta
tttaaaaaagaattcggaagagaaattcagcttattccgacctgtatttccaccgatatg
ataaacccgccggatattcttgcggttattgcaagctccgcagcggttcatatttcggat
attccctttgacggacctgtagctgcggcacgcgttgcattcaaaaacggagaatatatt
ataaacccgacatttgagcaaatagaaacagccgatatggaaatagtagtcgccggaaca
aaggacggcattacaatggttgaaggaggggctaacgaagtttccgaagaagttatgctt
acggctctcgaaaaggcccatgaaatgataaaggctctgtgtaaaatccaagaagattta
cggggacttgcaggaaaagaaaaattgccgcttgttcctcttgaagttgagcttgaaaat
aaacaagccatttatgatgaggcattcccgcgtctgagcaaaaccctttatctttccaca
aagatggaacgccgcgaggaatccgataaggtaaaagaagaaattgcggaaaaatatgcc
gaacagcttgaagatgaaattcagctaaaactttttaacgccctttttgaagaaatggaa
tataatattttacgtaaaaatattttggataagggtttgcgtgttgacgggcgcggcaca
aagaatatacgccccattacttgcgaaataggtgtattaccccgtccgcacggttcggcg
gtttttacccgcggcgaaacccagtctttgggagttgtaacaatcggaacggttttcgat
gagcaaatttacgacgacatcgaaggcgaccgaagagaaaattttattttacactacaat
ttcccgcctttctccgtaggtgaggtaggaagattaggcacgggaaggcgtgaaatagga
cacggaaatctggctcaccgctctctttatcctatgattccttcaagagaaaaatttccg
tacactgtacgtgtagtttccgagattttggaatctaacggctcttcttctatggcgacc
gtttgttccggaactctttcgcttttacatgccggtgttccgatgaaaaagcccgttgca
ggcattgctatgggtttaattaccgaaggtaacgaccgctatgcaattctttccgatatt
ttaggagaggaagaccatttaggcgatatggattttaaggttgccggtactgcggacgga
attacaggctttcaaatggatataaaaattgccggagtttcttccgaaattatgaaaaac
gcccttgctcaggctaaagaaggaagactgcatattctcggtataatgaaccaaactatt
tcagtccccagttcggagctttcacaatacgctccgcgtgtcgaaatgatgactatcccc
gaagataaaataggggcattaatcggccccggaggaaaaaacgtaaaagcaatttccgaa
aaatataatgtaacaataaataccgaaaacgacggaacggttactatttacggtaaagac
ggctcttccgatttaaaaggagcaaaatccattgttaagggaattacaagcgaccctgaa
gtaggaacggtctatgacggtgtcgttaaaaaaattatggatttcggagcctttatagaa
attatgccgggcaaagaaggtttgtgccatatatcgaaactttcgcgctcccgtgttgaa
aaagtttccgatgttttaaaagaaggacaggaaatacccgttaaacttttggaaatcgat
aaaatcggaaggcttaatctttcatatatcgacgcactggaagagaaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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