KEGG   Treponema putidum: JO40_06360
Entry
JO40_06360        CDS       T03278                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
tpk  Treponema putidum
Pathway
tpk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tpk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JO40_06360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpk03021]
    JO40_06360
   03400 DNA repair and recombination proteins [BR:tpk03400]
    JO40_06360
Enzymes [BR:tpk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JO40_06360
Transcription machinery [BR:tpk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JO40_06360
DNA repair and recombination proteins [BR:tpk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JO40_06360
SSDB
Motif
Pfam: RNA_pol_Rpb6 Sigma_reg_N
Other DBs
NCBI-ProteinID: AIN93780
UniProt: A0A562S8Y8
Position
complement(1346423..1346629)
AA seq 68 aa
MIFPLEELIEFDDNIYEITCASTRRAYQLAKIQDPNVEKSGNKVVSAGARQIFTGEVNYQ
IERHPELN
NT seq 207 nt   +upstreamnt  +downstreamnt
atgatttttccattagaagaactaattgagtttgatgataatatttacgagattacatgc
gcatcgacaagaagagcttatcagcttgctaaaattcaagaccccaatgtcgaaaaaagc
ggtaacaaggttgtttcagccggtgcaagacaaatttttaccggtgaagtaaactatcag
atagaacggcaccccgaattaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system