KEGG T01751: TPESAMD

Treponema pallidum subsp. pertenue SamoaD: TPESAMD_1006

Entry

TPESAMD_1006      CDS       T01751

Symbol

gyrB

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

tpm Treponema pallidum subsp. pertenue SamoaD

Brite

KEGG Orthology (KO) [BR:tpm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpm03032]
    TPESAMD_1006 (gyrB)
   03400 DNA repair and recombination proteins [BR:tpm03400]
    TPESAMD_1006 (gyrB)
Enzymes [BR:tpm01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     TPESAMD_1006 (gyrB)
DNA replication proteins [BR:tpm03032]
Prokaryotic type
  DNA Topoisomerases
   TPESAMD_1006 (gyrB)
DNA repair and recombination proteins [BR:tpm03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      TPESAMD_1006 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

AEZ58149

Position

complement(1096704..1098617)

AA seq 637 aa
MGIEYSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITV
VLEQGNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVS
VVNALSLWVEVTVYRDGAEYYQKFNVGMPLAPVEKRGVSEKRGTIIRWQADPSIFKETVA
YDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPER
PLYIEGSKSDVLVEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKK
SPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGER
LTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPA
KCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGT
GVGKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRI
AWSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVV
LSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLDV

NT seq 1914 nt +upstreamnt +downstreamnt
atggggattgagtactcagcgagtagcattactgtattggaaggtcttgaagcggtacgc
aagcgtccggggatgtatatcggctctaccggtcctaatggattgcaccatctggtgtac
gaggtggtggataactgtatcgatgaagccatggctgggtactgtgatcgtatcaccgtg
gtgctcgaacaaggaaacgttgtgcgtgttgaagacaacgggcgaggtattcctgttgac
gtgcaccctcatgagggggttagtgcgcttgaggttgtacttactaagttacatgcgggg
gggaagtttgacaagaaatcgtataaggtgtcgggtggactccacggagttggagtttct
gtggtcaacgcgctgtcgttgtgggtagaagtgacagtgtatcgtgatggtgctgagtat
tatcagaagtttaatgtggggatgccgcttgctccagtagagaagcggggagtgtcggaa
aaacgtggcactattatccgctggcaggcggacccatccattttcaaagaaacggtggcc
tatgattttgacgtactcctgacgcgtttgcgtgaacttgcttttttgaatagcacggta
gttattcagttgcgtgatgagcggttggcgaccgctaaacaggttgaatttgcgttcgaa
ggaggtattcgtcattttgtcagttatttaaaccgcggtaaatcagttgtgcccgaacgt
cctctgtacattgagggatcgaagtcggatgttttagtggaagttgcgttgcaatatcac
gacggttatacggaaaacgtgcagtcatttgtcaatgatattaatacccgtgaggggggc
acgcatcttgaaggatttaagtcggcacttacgcgtgtggcgaacgattttttgaaaaaa
agtccaaagcttgcaaagaagatagaaagggaagaaaagctcgttggggaagatgtgcgt
gctggattgacagtggtgctttctgtgaaaattcctgaaccccagtttgaagggcagaca
aagacgaagttgggaaacagtgaggtgcggggtattgttgattctttggtgggggagcgt
ctgacgctctattttgagcaaaatccaggtgtgcttacaaagattcttgaaaagagcatt
gcagaggcgcaggcgcgtcttgcagcacgtcgtgcaaaggaagctgcgcgcagaaaaagt
ggaatggatagttttgggttgccgggaaagttggctgactgttcgctcaaggatccggcg
aagtgcgaagtatatattgtggaaggggattctgcaggaggttcggcgaaaaaaggacgg
gacagcaagacacaggccattttgcctttgtgggggaagatgctgaacgtggaaaagaca
cgtttggataaggtcttgcataacgaaaaattacagccaattatcgcaacgctcggtaca
ggtgttggcaaggattttgatttaacaaggattcgctatcataaagtgatcatcatggcg
gatgcggacgtggatggctctcacatccgtacgcttcttttaacgttcttctttcgatac
ctgccgcaaataattgaagctggttacgtatatcttgcgatgccgcctttgtatcgcatt
gcgtggagtaaaaaggaactgtatgtgtatagcgacacagagcgtgacgaagcgctagaa
agtatcggtaaaaaaagtggtgtcgctgtgcagcgttataaaggtctgggggaaatggat
ggcactcagctttgggagacaactatgaatccagtgcgtcgcaagatgatgcaggtggtg
ctctcagatgcggtggaagcagaccgggtgtttagtactctcatgggtgaagatgtcgaa
ccgcgccgtaagtttattgaagagaatgcaatatatgcgcgtttggacgtatga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system