KEGG   Treponema pallidum subsp. pallidum SS14: TPASS_0634
Entry
TPASS_0634        CDS       T00716                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tpp  Treponema pallidum subsp. pallidum SS14
Pathway
tpp03030  DNA replication
tpp03410  Base excision repair
tpp03420  Nucleotide excision repair
tpp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TPASS_0634 (lig)
   03410 Base excision repair
    TPASS_0634 (lig)
   03420 Nucleotide excision repair
    TPASS_0634 (lig)
   03430 Mismatch repair
    TPASS_0634 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpp03032]
    TPASS_0634 (lig)
   03400 DNA repair and recombination proteins [BR:tpp03400]
    TPASS_0634 (lig)
Enzymes [BR:tpp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TPASS_0634 (lig)
DNA replication proteins [BR:tpp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TPASS_0634 (lig)
DNA repair and recombination proteins [BR:tpp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TPASS_0634 (lig)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TPASS_0634 (lig)
   MMR (mismatch excision repair)
    DNA ligase
     TPASS_0634 (lig)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TPASS_0634 (lig)
SSDB
Motif
Pfam: DNA_ligase_aden BRCT PTCB-BRCT DNA_ligase_OB HHH_2 HHH_5 BRCT_2 DNA_pol_lambd_f MutS_III
Other DBs
NCBI-ProteinID: ACD71053
UniProt: B2S3M4
Position
693835..696306
AA seq 823 aa
MSTAQRRVQELEKLILHHQDRYYNAESDISDDAFDALWEELARLDPGNPLLKAIGSDSQR
DAVKKRHIVPMGSQHKAADEESFSAWAKKNALQAFLVQHKLDGVSLELQYERGHFCCALT
RGNGIVGDDVTANVRGMRGFVPTLTAEWGPCGNLPFTGGVRGEVIMHKDIHRSHYPTHAN
CRNTVNGILKRKDGRGRTHLHIVCYDAVPGTPGKPFTGSLPFADETEKLAWLARQGFVTV
HSHRCANAQEVVALRSEIMRTRELLPYSIDGLVVKSTDLDFQDAQLPRPKKQIAFKFSTQ
EAITTLRDVQWQTSGVTYTPIGITDPVRLAGTTVKRANLCNPNMLTKLCLKIGSHVLISK
RGEIIPKIEALVSTPAHAQEIHIPTQCTSCNTVLENSGSRLFCPNVNCPLLSHHRITRWI
ECLEIKHVGTELIQRLFEEKKVRRIPDLYTLTCEDLIEIEHVGNATAKKILEAIHHKKEI
ALQTFIAGFGIEGIGETMGEKLICAGFDTLEKVLHATTETLESIYQFGTELAKSVVTGIA
RVKDDMCELLDRGFVRILAKQQAESPLRGKSFCFSGSLRNGDRATIHRIRALGGVVRTSV
TRDLSYLIFESLSQPYRTAQKLKKEQGVALEIISEDEFCRLLDQASASCTHTGETVHPLQ
GKSFYFSGASRSMNHKHAQEKVRALGGDVASSVTAQLDYLVFYSQSTRYRTACALGIQII
SEETLHKLIATAQSPLHTDAHVHAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAV
STQLTYLVSNDPHGQSRKCQNAVRCGVRIISEHVFLALCTPGT
NT seq 2472 nt   +upstreamnt  +downstreamnt
atgagtactgcgcagagacgtgttcaagaacttgaaaagctcattcttcaccatcaagac
cgctactacaacgcggagtctgatatttcagatgacgcctttgacgcgctttgggaagaa
cttgcaaggcttgatcctggaaatccgctgcttaaagcaatcggttctgacagtcaacgt
gacgcagtgaaaaagcgccacattgttcctatgggtagtcaacacaaagctgcagacgag
gagtccttcagcgcatgggcaaaaaaaaatgcattgcaggcatttctcgtccaacacaaa
ctcgatggcgttagcttagagttgcaatacgagcgcggtcatttttgctgtgcgctcacc
cgtggtaacggcattgtcggagacgacgtcactgctaacgtacgcggcatgcgtggcttt
gtgccgaccctcactgcagagtggggaccttgcggcaatctccccttcacggggggtgtt
cgtggcgaagtcattatgcacaaggatatacatcgttcccactatcctactcacgcaaat
tgccgcaacaccgtaaacggcatcctaaagcgaaaggacggccgcggccgcacccacctc
catattgtttgttacgacgcagtacccggcacccccggtaaaccgttcaccggctccctc
ccctttgctgatgaaacagaaaagcttgcctggctcgcgcgccaaggtttcgtgacggta
cattcgcatcgctgcgctaacgcacaggaagttgttgcactccgatctgagattatgcgc
acgcgcgagctgttgccttacagcatcgatggcctggtagtaaagagtaccgatcttgac
ttccaggacgcacaacttcccagacctaaaaagcagatagcctttaagttcagtacacag
gaggcgataaccaccttgcgtgacgttcaatggcaaacatcaggagtgacgtacacgccc
attggtattaccgatccagtgcgccttgcaggaactacggtcaagcgcgcaaatttatgt
aacccgaatatgctcacaaagctgtgtctcaaaattggcagccacgttttaatttccaaa
cggggggagattatcccaaaaattgaagcactcgtttcaaccccagcacatgcgcaggaa
atccacataccgacacagtgtaccagttgcaacacagtgctggaaaacagtgggagcagg
cttttttgtcctaatgtaaactgccccctgctctcgcatcaccgcattacacggtggatt
gagtgtttggagatcaagcatgtggggaccgaactcattcagcgtctttttgaagaaaaa
aaggtacgccgcatcccggacctctacacgctcacctgcgaggatctcattgagattgag
cacgtcggcaatgcaactgcaaaaaaaatactcgaagctatacaccacaaaaaagaaata
gcgttgcaaacgtttattgccgggtttggcatcgaggggatcggagaaaccatgggagaa
aaacttatctgtgccggttttgacacacttgaaaaagtgctccacgcaacaacggagaca
ctcgagtccatctatcagtttggaacagaacttgcaaaaagcgtggtaaccggtattgca
cgggttaaggatgatatgtgtgaactgcttgatagaggcttcgtgcgcattcttgccaag
cagcaggcagagtcgccactccggggaaaaagcttttgcttctcaggctccctcagaaat
ggagatcgcgcgactatacaccgtatacgcgcgctcggaggcgttgtgagaacgtcagtt
actcgagacctttcgtacctaatattcgaaagcctatcacagccctatcgcaccgcgcaa
aaactaaaaaaagaacagggggtagcgctagaaattatttcggaagacgagttttgcagg
cttctagatcaagcttccgcatcctgtacccatacgggggaaaccgtacaccccttgcaa
ggaaagagtttttatttctcaggtgcgtcgcgcagtatgaatcacaaacatgctcaagaa
aaagtgcgcgcgttaggaggggatgtcgcatcgtccgtaacagcccagcttgactatctg
gtgttttacagtcagtcgacacgttatcgcaccgcatgcgcgttgggaatccaaattatt
tcggaagagacgctccacaagcttattgccactgcccaatcgcctttgcatacggatgca
cacgtgcacgcgccattgcacggcatgagcttctgcttctctggcgatctcgacggtatg
acacgcgcccaggcaatcgcgctcgtacaacgcctaggcggaacagtgaaaacggctgtc
agtacacagctgacgtatctggtgtcaaacgatccacatgggcagtcacgcaaatgccag
aacgctgttcggtgtggcgtgcgtattatcagtgagcacgtctttctcgctctgtgcacc
ccggggacctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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