KEGG   Treponema pallidum subsp. pallidum SS14: TPASS_0709
Entry
TPASS_0709        CDS       T00716                                 
Name
(GenBank) RNA polymerase sigma-28 factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
tpp  Treponema pallidum subsp. pallidum SS14
Pathway
tpp02020  Two-component system
tpp02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tpp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    TPASS_0709
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    TPASS_0709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpp03021]
    TPASS_0709
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:tpp02035]
    TPASS_0709
Transcription machinery [BR:tpp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     TPASS_0709
Bacterial motility proteins [BR:tpp02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    TPASS_0709
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 GerE Phage_antitermQ
Other DBs
NCBI-ProteinID: ACD71127
UniProt: A0A0H3BL32
Position
777336..778124
AA seq 262 aa
MGNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVS
YGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIAD
LEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISLADSKFGGDERDHVSVGDSIE
APASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRIS
QIHTSANLKLKAKLTNIKKGIR
NT seq 789 nt   +upstreamnt  +downstreamnt
atggggaacacagccttcgaacagcagtcggaagaggagctttggctcgagtatcggagg
acgcgtagcgcgaaaatacgcgagtactttgttgtgcagtacgctcctctggtcaaatac
gttgcaagcaaaattgccgttgggaaaccggggaacgttgagttcgatgacctcgtaagc
tacggtatctttggtctttttgacgctatcgataaatatgacccagaaaaaaacattcga
tttaatacgtacgcggttacgcgcatccgcggtgctatctttgatgaactgcgctccatc
gactgggttccccggtcggtgcgtcagcaaacacgccagatagaagaagcgattgcagat
ctagaggcacgccttgggcgtgmtgccacagatactgagatcgcgtgcgcgctgaatatt
gagcttgaagagtaccaccagctcctcttgaaggtgtccggcacgagcgtgatttccctt
gccgattcgaagtttggtggagatgagcgagaccacgtctctgtgggagacagcatcgaa
gcgcccgcttctctcaatcccgacgtcattgtcgaacgcgaggaaatcaagcgtatcatc
gcagaggcaattagggaactttctcaacgcgagcagcaggtgctcatactatactactac
gaagaaatgaccttaaaggagattggcaaggtgctcaaagtgaccgagtcgcgtatctct
cagatccacaccagcgcgaatttaaagttaaaggcaaagctcaccaacatcaaaaagggt
atccggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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