KEGG   Tsukamurella paurometabola: Tpau_4223
Entry
Tpau_4223         CDS       T01228                                 
Name
(GenBank) polynucleotide adenylyltransferase/metal dependent phosphohydrolase
  KO
K00970  poly(A) polymerase [EC:2.7.7.19]
Organism
tpr  Tsukamurella paurometabola
Pathway
tpr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tpau_4223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpr03019]
    Tpau_4223
Enzymes [BR:tpr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     Tpau_4223
Messenger RNA biogenesis [BR:tpr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     Tpau_4223
SSDB
Motif
Pfam: PolyA_pol PolyA_pol_RNAbd HD tRNA_NucTran2_2 Cas3_HD PA_decarbox
Other DBs
NCBI-ProteinID: ADG80791
UniProt: D5UP82
Position
complement(4354000..4355460)
AA seq 486 aa
MTDSTSDARAERRTRLLAAAHISLRELSDVLVPLGTRFADAGHELYLVGGSVRDALLGRL
TSDLDFTTDARPEQVQALLRGWADAMWDTGIEFGTVSAAFHDQQIEITTYRAEAYDRVTR
NPVVKFGENLRDDLVRRDFTINAMAVRIGRDGAEDFQDPLNGLDALLAGVIDTPATPEES
FSDDPLRMLRAARFVSQLGFAVAARVQRAMTDMAPEIDRITAERVRAELDKLILGEHPVD
GIVLLVDTGLAERVIPEIPGMKLAIDEHHQHKDVFWHSMTVLQQAIDLEESDPDLILRWA
ALLHDIGKPATRRHEPNGGVSFHHHEVVGAKMVRKRMRALAYPKSVIEDVAQLVFLHLRF
HGYGDGQWTDSAVRRYATDAGPLLPRLHKLVRADCTTRNKRRAARLQATYDGLEERIAKI
AAQEDLARVRPDLDGNAIMELLGLPPGPQVGAAWKYLKELRLDRGPMDRDEAEAELAKWW
AAQQGS
NT seq 1461 nt   +upstreamnt  +downstreamnt
gtgaccgattcgacttccgacgcgcgcgccgagcgccggaccaggctgctcgcggccgcg
cacatctccctgcgtgaactctccgatgtgttggtgccgctgggaacccggttcgccgac
gcgggtcatgagctgtacctggtgggcgggtcggtgcgggacgcgctgctcggccgtctc
accagcgatctggatttcaccaccgacgcccgcccggagcaggtgcaggcgttgctacgc
ggctgggcggacgcgatgtgggacaccggtatcgaattcggcaccgtgagcgccgccttc
cacgatcagcagatcgagatcaccacctaccgggccgaggcctacgaccgcgtcacccgg
aaccccgtcgtgaagttcggtgagaacctgcgcgacgatctggtgcgccgcgacttcacc
atcaatgcgatggcggtgcggatcggccgcgacggcgccgaggacttccaggatccgctg
aacggcctcgacgcgctgctcgccggcgtgatcgacacgcccgcgacgcccgaggagtcc
ttctccgacgatccactgcgcatgctccgcgccgcccgcttcgtctcccagctcggcttc
gccgtcgctgcgcgggtgcagcgcgcgatgaccgacatggcgcccgagatcgaccggatc
accgccgagcgggtgcgggccgagctggacaagctcatcctgggcgagcatcccgtcgac
gggatcgtgctgctggtcgacaccgggctcgccgagcgggtgattcccgagatccccggc
atgaagctcgcgatcgacgagcaccatcagcacaaggacgtcttctggcactcgatgacg
gtgctgcagcaggccatcgacctcgaggagtccgaccccgacctgatcctgcggtgggcg
gcgctgctgcacgacatcggcaaaccggccacccgccggcacgagccgaacggcggcgtc
tccttccatcaccacgaggtggtgggcgcgaagatggtgcgcaagcggatgcgggccctg
gcgtacccgaagtcggtgatcgaggacgtcgcgcagctggtcttcctgcatctccgattc
cacggctacggcgacggacagtggaccgattcggcggtgcgccggtacgccactgacgcg
gggccgctcctgccccggttgcacaaactggtgcgggcggactgcaccacccggaacaag
cgccgcgccgcgcgcctgcaggcaacctatgacggcttggaggagcggatcgcgaagatc
gccgcgcaggaggacctggcgcgggtgcggcccgacctggacggcaacgcgatcatggag
ttgctgggccttccgcccgggccgcaggtgggcgccgcgtggaagtatctcaaggagttg
cgcctggaccgggggccgatggaccgcgacgaggccgaggccgaactcgcgaaatggtgg
gccgcgcagcagggctcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system