KEGG   Salipiger profundus: Ga0080559_TMP3537
Entry
Ga0080559_TMP3537 CDS       T04656                                 
Name
(GenBank) RNAse E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
tpro  Salipiger profundus
Pathway
tpro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ga0080559_TMP3537
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpro03019]
    Ga0080559_TMP3537
   03009 Ribosome biogenesis [BR:tpro03009]
    Ga0080559_TMP3537
Enzymes [BR:tpro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Ga0080559_TMP3537
Messenger RNA biogenesis [BR:tpro03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Ga0080559_TMP3537
Ribosome biogenesis [BR:tpro03009]
 Prokaryotic type
  rRNA processing factors
   Ga0080559_TMP3537
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: APX24333
UniProt: A0A1U7D882
Position
3127115..3130057
AA seq 980 aa
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEDDDENDKEKSRSRSSKSRSRR
SRSRSKAETAGNDDKTASADVSEIKGMETIDLETEGAGDTPLDVVEDTIAAGAADAPVAD
PAPANDSDAGTETAPAAEAQPAARDVSDEGDDCDDDDGDSDPRDDSIESVADDDTEEEIR
PRRKPRARKYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGG
ISRKITNATDRSKLKQIAQEIDVPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLWEQIREL
TLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGEKGYRIAKDFMKMIMPSHAKNVKH
YVDPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEET
ALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNTAVEKKLKDKLKTDRARIQVGR
ISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRSDDNMALNILRQIEEEGTRRRSRE
VLVKCPVGIANYLMNQKREHVAMIEARYGMAVRIEGDTALVSPDFTMEKFKTATRNVPEV
VAPVVSVDTSLMDQIDEDSAEAEEVDPEEAPAPVAEAAAPAPEAEGEDEGKPKKRRRRRR
RSRSKNKDNGENGQNGDDSAPNGEDKGSEDKTEQAPAETAKDKGETPAEPVAAAADAPVE
ASSDASGEAPAAEEEAPAKPKRSRSRSRSRKPAKAETEAATENASDAPAADAAPASAVEE
TAAPVAEPTAEVVPEAPAAEVSEAPEPEAEPEPAPVADPEPEAAEEVAAPAAEAPAVEPA
PEAEAPAVEPASEDAPAEPEAAAPAEEAEEPAETPQPAEEATESAPAPEEERQPEPVAET
AGEDKDDGKPKRRGWWSVGL
NT seq 2943 nt   +upstreamnt  +downstreamnt
atggcaaagaaaatgctcatcgacgccacccacgcggaggaaacccgcgtcgtggtggtc
gacggaaacaaggtcgaggaattcgacttcgaatcggagaacaagcgtcagctagccggc
aacatctatctcgcgaaggtcacccgcgtggagccctcgctccaggccgccttcgtcgat
tacggcggcaaccgccacggcttcctcgccttctctgaaatccacccggattactaccag
atccccgtcgcggaccgtcaggccctgatggaggaagaagccgcactcgccgccgaggac
gacgacgagaacgacaaggaaaagtcgcgctcgcggtcctccaagtcgcggtcgcgccgg
tcgcgctcgcgctccaaggccgagaccgccggcaacgacgacaagaccgccagcgcggac
gtctccgagatcaaggggatggagaccatcgacctcgagaccgagggcgccggtgacacg
ccgctcgacgtcgtcgaggacaccatcgccgcaggcgcggccgacgcccccgtggccgat
ccggctccggcgaacgacagcgacgccggcaccgaaacggcgcccgccgccgaggcgcag
cccgccgcgcgggatgtctcggacgagggcgacgactgcgacgacgatgacggcgacagc
gatccccgggacgacagcatcgagtcggtcgccgatgacgacaccgaggaagagatccgt
ccgcgccgcaagccgcgcgcccggaagtacaagatccaggaagtcatcaaggtgcgccag
atcatgctggtgcaggtcgtcaaggaagagcggggcaacaagggtgccgcgctgaccacc
tacctgtcgctggcgggtcgctactgcgtgctgatgccgaacaccgcccgtggcggcggc
atctcgcgcaagatcaccaacgccaccgaccgctcgaagctcaagcagatcgcgcaggag
atcgacgtgccgaagggcgcggggctgatcatccgcaccgcgggcgccaagcgcaccaag
accgagatcaagcgcgactacgaatatcttcagcgtctgtgggagcagatccgcgagctg
acgctcaagtcggtcgcgcccgccaagatctacgaggaaggcgacctcatcaagcgctcg
atccgcgacctctacaatcgcgagatcgacgaggttcacgtcgagggcgagaagggctac
cgcatcgccaaggacttcatgaagatgatcatgccgtcccacgcgaagaacgtgaagcat
tacgtcgacccgatgccgctcttcgcgcgctaccaggtcgagagctacctcagctcgatg
ttcaacccgaccgtgcagctcaagtccggcggctacatcgtcatcggcgtgaccgaggcg
ctggtcgcgatcgacgtgaactcgggccgggcgaccaaagagggctccatcgaggagact
gcgctcaagaccaacctcgaggccgccgaggaagtggcgcgccagctgcgtctgcgcgac
cttgccggcctgatcgtcatcgacttcatcgacatggacgagcggaagaacaacaccgcc
gtcgagaagaagctgaaggacaagctcaagaccgaccgtgcccgcatccaggtgggccgg
atctcgggcttcggcctgctcgagatgtcgcgccagcgtctgcgccccggcatgatcgag
gcgacgacccagccgtgtcccgcgtgccacggcaccggtctcatccgctccgacgacaac
atggcgctgaacatcctgcgccagatcgaggaagagggcacccgccgccgttcgcgcgag
gttctggtgaagtgcccggtcggcatcgcgaactacctgatgaaccagaagcgcgaacac
gtcgccatgatcgaggcccgctacggcatggccgtgcggatcgaaggtgacaccgcgctg
gtctcgcccgacttcaccatggagaagttcaagacggcgacccggaacgtgcccgaggtg
gtcgcgccggtcgtgtcggtcgacacctcgctgatggaccagatcgacgaggacagcgcc
gaggcggaagaggtcgaccccgaggaggcgcccgcacccgtggccgaggccgccgcgccg
gcccccgaggccgaaggcgaggacgagggcaagcccaagaagcgtcgtcgtcgtcgccgt
cgctcgcggtccaagaacaaggacaacggcgagaacggccagaacggtgacgactccgcc
cccaatggcgaagacaagggctccgaggacaagaccgagcaggcgccggcagagacggcc
aaggacaagggcgaaacccctgccgagccggtcgcagccgctgcggatgcgccggtggag
gcaagctccgacgccagtggcgaggcgcccgccgccgaggaagaggctcctgccaagccc
aagcgcagccggtcgcgcagccgctcgcggaagcctgcaaaggccgaaaccgaggcagcg
accgagaacgcttcggacgcgcccgcagccgacgccgcgcccgcatctgcggtcgaggaa
actgccgcgccggtggccgagcctaccgccgaggtcgtgcccgaagcgcctgccgccgag
gtgagcgaagcgcccgagcctgaagcagagcctgagcccgcacctgttgcggaccccgag
ccggaggcggccgaggaggtcgcggcaccggcagcggaagctccggcagtcgaacctgcg
ccggaagcggaggcaccggccgtcgagcctgcgtcggaagacgcgcccgccgagccggag
gcagccgcacccgccgaggaagccgaggagccggccgagacgccgcaaccggcggaagag
gcgaccgagagcgcgcctgcgcccgaggaagagcgtcagcccgagccggtcgcggaaacc
gccggcgaggacaaggacgacggcaagcccaagcggcgcggctggtggtcggtcggtctc
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (101)   
   KEGG ORTHOLOGY (1)   
   RefGene (98)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (113)   

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