KEGG   Thalassiosira pseudonana: THAPSDRAFT_1294
Entry
THAPSDRAFT_1294   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K10740  replication factor A3
Organism
tps  Thalassiosira pseudonana
Pathway
tps03030  DNA replication
tps03420  Nucleotide excision repair
tps03430  Mismatch repair
tps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    THAPSDRAFT_1294
   03420 Nucleotide excision repair
    THAPSDRAFT_1294
   03430 Mismatch repair
    THAPSDRAFT_1294
   03440 Homologous recombination
    THAPSDRAFT_1294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tps03032]
    THAPSDRAFT_1294
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_1294
DNA replication proteins [BR:tps03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    THAPSDRAFT_1294
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     THAPSDRAFT_1294
   MMR (mismatch excision repair)
     THAPSDRAFT_1294
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     THAPSDRAFT_1294
SSDB
Motif
Pfam: Rep_fac-A_3 DUF5818
Other DBs
NCBI-GeneID: 7446837
NCBI-ProteinID: XP_002286149
JGI: 1294
UniProt: B8BQI3
Position
1:1151094..1151396
AA seq 100 aa
MSSQPDGAFPRVNHALIKQGQYIGLIVSVVGRTVNFDGQSNLEIECSDGGRVTITVDPEY
NYVPGQVLEIMGHLMDENTIQVGWGGGVGVALLCNDTDVS
NT seq 303 nt   +upstreamnt  +downstreamnt
atgtcatcccaacccgacggagccttcccccgcgtaaaccacgccctaattaaacaaggc
caatacatcggcctgatcgtcagcgtcgtcggccgcaccgtcaacttcgacgggcagtcc
aacttggagattgaatgctcggatggaggacgagtgactattacggtggatccggagtat
aattatgtgccggggcaggtgttggaaattatgggtcatttaatggatgagaatactatt
caggtgggttggggtgggggtgtgggggtggcgttgctgtgcaatgacacggacgtatct
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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