KEGG   Thalassiosira pseudonana: THAPSDRAFT_268270
Entry
THAPSDRAFT_268270 CDS       T01078                                 
Name
(RefSeq) niemann-pick C type protein-like protein
  KO
K12385  Niemann-Pick C1 protein
Organism
tps  Thalassiosira pseudonana
Pathway
tps04142  Lysosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
    THAPSDRAFT_268270
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    THAPSDRAFT_268270
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:tps02000]
    THAPSDRAFT_268270
Transporters [BR:tps02000]
 Solute carrier family (SLC)
  SLC65: NPC-type cholesterol transporter
   THAPSDRAFT_268270
SSDB
Motif
Pfam: Sterol-sensing Patched ACR_tran MMPL DUF4500
Other DBs
NCBI-GeneID: 7444647
NCBI-ProteinID: XP_002287311
JGI: 268270
UniProt: B8BUG7
Position
2:1093519..1095920
AA seq 631 aa
MGNKLCGRGSRWTMAFSALMLVALSTVAGFGIASLGGLLYGPVHSVLPFVLLGIGVDDAF
VIANAFDREREGVPRDTEDDESMVKRGARALARSGASITVTSLTDLVAFAISSSSALPAL
GSFCAFASINIFFLWALSATFFTATMLLDEKRQRANRRDMLCCFTRKAIKDEEDTGSKEG
IISKYFRNYHAPAILSKPGKAICIAVFAGLFAFGVYGTTQLPVEDSSRNFIPSDSYINSY
ASAADEYFPSSGTSLHITFENGRDIYNNRESLAALDNRVKGLSKEPPYIAEPDSDSTYQN
VMTGMKIFLSTYGTGAIGNMTLGDDSWPATYDDFVQALGLYANIRGPGARYAQDVAMSSD
ASDLNAFRVKLEYVRLTKLRRGDVIDDADRQIKAMDATRDMVGSWTDLPEAFPYSEKFIT
VEGFKIINTELYRNVGLAIMAVGLIVLITVANIVTALLITVNVAFCIVEILGFMYALGLV
IDSVSVINLVLAVGLSVDYSAHIGHCFMVKGGNSRDHRATEALADIGASVLNGALSTFLA
VAVLLFSTSYVFKTLSTQFALTVGLGVVHGLVLLPVLLSLVGPHPFSSAEEPKEVEPEAT
KVIDKTEHAESFGADALQNDEDGEDVEEEEA
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgggtaacaaattgtgtgggcgtggtagtaggtggacaatggcattctcagccctcatg
ctcgtggctttgtcaaccgtggctggttttggtattgcttcattgggaggattgctttat
ggcccggttcattccgtacttccatttgtactcttgggtattggtgtggatgacgcattc
gtgattgcaaatgcttttgatagagaacgcgagggagtacctcgggatacagaagatgat
gagagtatggtgaagcgtggtgctcgtgcactggctcgttcgggtgcttccatcactgtg
acttctttgacggatctcgtggcgtttgccatctcttcatcgtcggcattgccggcattg
ggtagtttctgtgcctttgcttcaatcaacatcttctttctatgggccttgtcagctacc
ttcttcaccgcaaccatgcttttggacgagaagcgtcaacgtgccaacagaagggacatg
ctatgctgtttcactcgtaaggcaatcaaagatgaagaggacactggatcaaaggaggga
atcatctcaaagtattttagaaactaccacgctcctgccatcctatccaagcccggaaaa
gcaatctgcatcgctgtatttgcaggcctctttgcttttggagtgtacggaacaacacag
ctcccggtggaagatagctccaggaactttatcccgagtgatagttacatcaattcctat
gcttctgctgcagacgagtactttccctcgtcaggcacctctctgcacattacgttcgag
aacggcagggacatttacaacaatcgcgaaagcttggctgcactagataatcgcgtgaag
ggactaagcaaggaacctccatacatcgccgaacccgactctgactcgacttaccaaaat
gtgatgactggtatgaaaattttcttgtcaacttacggtacgggagcaattggaaatatg
acacttggcgacgactcttggccagcaacctacgacgactttgtccaggctctcggttta
tacgctaatatcagaggcccaggtgcaagatacgcacaggacgttgctatgtcgtccgat
gcatctgatctcaacgcctttagagtcaaactagagtacgttcgcttgacgaagcttcgt
agaggcgatgtcattgatgatgctgatcgtcaaatcaaggcgatggatgcaacgagggac
atggttggatcttggacggacttgccagaggccttcccttacagcgagaagttcattact
gttgaggggttcaagatcataaataccgaattgtaccgtaacgtagggttggcaattatg
gctgttggcttgatcgttctcattacggtcgcaaatatagttacggcattgttgatcacg
gtcaatgtagcattctgcattgttgagattctcggatttatgtacgctctgggattagtc
atcgactctgtttccgtcatcaacctggttcttgcagtgggtctctccgtggactattca
gctcatattggtcattgctttatggtgaagggtggaaactcacgagatcaccgtgcaaca
gaagcacttgccgatataggcgcgtcggtgctcaacggggctctcagtaccttcctagcc
gttgctgtattactctttagtacgtcatatgtgttcaagactctctcgactcagttcgcc
ttgacggttggactcggtgtggtgcacggattggttcttcttccggtacttttgtcattg
gttggtcctcatccattctcgtcagccgaagagccgaaggaagtggaaccagaagcgacc
aaagtgatcgataaaacagaacatgccgagagcttcggcgcagacgctctccaaaacgac
gaggatggtgaggacgtcgaagaagaggaggcctag

  All links  
Gene (621)   
   RefGene (617)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (629)   

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