KEGG   Thalassiosira pseudonana: THAPSDRAFT_32339
Entry
THAPSDRAFT_32339  CDS       T01078                                 
Name
(RefSeq) transcription initiation protein spt4-like protein
  KO
K15171  transcription elongation factor SPT4
Organism
tps  Thalassiosira pseudonana
Pathway
tps03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    THAPSDRAFT_32339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_32339
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_32339
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     THAPSDRAFT_32339
  RNA polymerase I system
     THAPSDRAFT_32339
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     THAPSDRAFT_32339
SSDB
Motif
Pfam: Spt4 Acc5b_avian_CoV
Other DBs
NCBI-GeneID: 7452176
NCBI-ProteinID: XP_002287639
JGI: 32339
UniProt: B8BTE9
Position
2:complement(202537..203216)
AA seq 117 aa
ASVPTSLKGVRACMRCGIIKTLDQFLEYGCENCPFLDMAGNHERCNLCTTAFFEGQVAVM
DPSESWTAKWIRIDAYLPGVYAISVTGQFDRDIEEELENRGCRWRCRPVGADANGSW
NT seq 354 nt   +upstreamnt  +downstreamnt
gcatcggtccccacctcgctcaagggcgttagggcttgtatgagatgtgggattatcaaa
actttggatcagtttttggagtatggttgtgagaattgcccttttttggatatggctgga
aatcacgaacgatgcaacttgtgcacgaccgccttcttcgagggtcaagtagctgttatg
gatcccagtgaatcatggacggcgaaatggatcagaatagacgcatacctccccggagta
tacgcaatatccgtaacaggacaatttgatcgggacatcgaggaagagttggagaatcga
ggttgtcgatggaggtgtaggcctgtgggtgctgatgcgaatggtagttggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (62)   

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