KEGG   Thalassiosira pseudonana: THAPS_19743
Entry
THAPS_19743       CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPS_19743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPS_19743
   03041 Spliceosome [BR:tps03041]
    THAPS_19743
   03032 DNA replication proteins [BR:tps03032]
    THAPS_19743
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     THAPS_19743
Spliceosome [BR:tps03041]
 Complex A
  U1 snRNP components
   Sm proteins
    THAPS_19743
  U2 snRNP components
    THAPS_19743
 Complex B
  U1 snRNP components
    THAPS_19743
  U4/U6.U5 tri-snRNP components
    THAPS_19743
 Complex C
  U2 snRNP components
    THAPS_19743
DNA replication proteins [BR:tps03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     THAPS_19743
SSDB
Motif
Pfam: LSM SM-ATX DUF6338
Other DBs
NCBI-GeneID: 7447051
NCBI-ProteinID: XP_002295845
JGI: 19743
UniProt: B5YN26
Position
7:997543..997891
AA seq 85 aa
VGIPIVLLHDAEGAVVTVETKRGELIRGLLFEAEDMMNLYLKKAVVLGPKPGAKRNVEQV
YVRGTEIVFIVLPEMLRHAPMFQRI
NT seq 255 nt   +upstreamnt  +downstreamnt
gttggtatccccatcgttctcctacacgatgctgagggtgccgttgttacagttgaaaca
aagcggggggagcttatccgtggcttgctcttcgaagcagaggatatgatgaatctctat
cttaagaaagctgtcgtcctcggcccaaaacccggagccaaacgcaacgtagaacaagtc
tacgtccgaggcacggaaatagtattcatagtcctaccagagatgttacgacacgcacca
atgtttcaaaggatt

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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