KEGG   Thermotoga petrophila RKU-1: Tpet_1246
Entry
Tpet_1246         CDS       T00525                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpt  Thermotoga petrophila RKU-1
Pathway
tpt03410  Base excision repair
tpt03430  Mismatch repair
tpt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tpt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Tpet_1246
   03430 Mismatch repair
    Tpet_1246
   03440 Homologous recombination
    Tpet_1246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpt03400]
    Tpet_1246
DNA repair and recombination proteins [BR:tpt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Tpet_1246
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Tpet_1246
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Tpet_1246
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: ABQ47260
UniProt: A5IM37
Position
1261079..1263946
AA seq 955 aa
MKKWELSQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESHQHNPFLFN
DMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEGYG
IQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAIVN
PKVPGENYPFRDLAGVGVTYKLVQAISEAINYPHPERFLELVALGTVADMVSLLDENRYF
VKKGIELLSNTKRVGLKRLLERLGLKNLTSHDISYKIAPRLNAAGRMGSANDAFNLLIMN
DPAKADGVVDRLMELNSIRRKTEWAIYKEAIEIIETNDLWKDPVIVVAKENWHVGVIGIV
AAKLANRYEKPVAVVSLDEKIAKGSIRSYNGYDIMNIFNEDILKIFEEIGGHSSAVGFSL
KRDQLESFREYIRNISLEGREEKVIVDAEVRMEDIDDRFIEDIKKLMPFGQGNPEPVLLF
KDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSSSLSTLPVTPTRGDVVVNLR
PMGNGISYYLVSLDVKPILSVKNREVSHILSRPKEEKTLIKVPYPSKTKLLLSIKEELQG
KLAIVSLTNATTQNILGCLSRYYTSKNLGFVNSTFSKEEESDIVLFTLAGFLKKHRLDDF
EVFVVNEFQDFLAHRDSELVKNFLDIVDKHPGKFIFVASIEHPELEEFLKKEKYDVVELR
TDEPEKFLFSDQRNSFDLGSLVDAHSFAVVVSEKKLIPDLYRKIGKDAVVYYTSMDVEKK
IKAISLMESGSARKAIITSNTDGLPTHIKGDIFFYDFPLSIYEIVDLLRRKSVVNLCYSS
SDIEKRRYELNKLFPDREKLKEIAITAMNLKDKEKLEKILESEYDLSSATLRKIYLDLLE
ESGFNFDRWSFSEDERIPWRLLERELEIAQFERTVSVLSKDLKWIFNFFKDTVVK
NT seq 2868 nt   +upstreamnt  +downstreamnt
atgaaaaagtgggaactttcacagcctgatgagaaggctgtgtcagagatttctcagtat
tttggtctcaatgaaattgcatcgagaatactcgtgaacagaggcttcaccaccagagaa
gcggtagaggctttcctgttcatcaatgaatcccaccagcacaatccctttctcttcaac
gatatggaaaaagcggttgaaaccctgcttgaagcccggtccaggaacgagctcgttctg
attcacggagactacgatgtggatgggataacttccaccgttatattgaaggaatttctc
gaagagaacggctggcgcgttgatgtttatattccacaccgtatcgaagagggatacggt
attcagctggaaaacatcttgacttttaaagagaacaacgtttcctgtcttgtaacggtt
gactgcggaataaccgcactggattcggtcgctcttgcgaaaaaattcggaatgaaagtg
atcatcacagaccaccacgaggtgaacggtgacctcccccccgccgatgccattgtgaac
ccgaaagtacctggagagaactacccattcagagatcttgcgggtgtcggtgtaacctac
aaactcgtccaggccatttctgaggcgatcaattatccccatcccgagagatttttggag
ctggtagctcttggaacggtcgctgatatggtctccctccttgacgaaaacagatacttc
gtgaaaaaaggaatagaactgctttcaaacacaaaacgcgtgggcttaaagaggcttctg
gaaagacttggcctgaagaacctcacatcgcacgatatcagttacaaaatagctccccgt
ctcaacgccgctggccgtatgggcagtgccaacgacgccttcaatttactgataatgaac
gatccagcgaaagcggacggtgttgtggataggttgatggagctgaacagcatcagaagg
aaaacagaatgggcgatatacaaagaagcaattgaaataatcgagacaaacgatctgtgg
aaagatcccgtcatagtcgttgcaaaagaaaactggcacgtgggagtcatcggcatagtc
gctgccaaactggcaaatcgttatgaaaaacccgttgcagtcgtctctctggacgagaag
atagcgaaaggttccataaggagctacaacggttatgacataatgaacattttcaacgaa
gatattctcaaaatattcgaggagataggtggccattcttcagcggttggtttctccttg
aaaagagaccaactggaatcgttcagggaatacatcagaaacatttctctggagggacga
gaagagaaggtgatcgttgatgctgaagtcagaatggaagatattgatgatcgcttcatt
gaagatataaaaaaactcatgcccttcggtcagggaaatccggaacctgttcttctcttc
aaagacgtactgatagaaaagattcatttctttggagaagacggtagcaacgtgttcctt
cacctgaaaaacggcgaaaagaacctggaagttgtgggatacaatttcaagaacctctcg
agttctctctctacattaccagtaactcccaccagaggagacgttgtggtgaatctacgt
cccatgggaaatggaatttcttactatcttgtctcgctggatgtaaagcctattctttct
gtaaaaaacagagaagtgagtcatatactgagtagacctaaagaagaaaaaacactgata
aaagtaccttacccatcaaaaacaaagcttctgctgtccataaaggaagagcttcaggga
aaactggcgatcgtttctttaacgaacgccacgactcaaaacattctggggtgcctttcg
aggtactacacctccaaaaacttgggatttgtaaattctaccttttccaaggaagaagaa
agcgatattgtcctcttcacccttgcaggttttctgaagaaacaccgtctggatgatttt
gaagtatttgtggtgaacgagttccaagattttctggcgcatcgcgacagcgaactggtc
aaaaacttcctggacatagtcgacaaacacccaggaaaattcatcttcgttgcctcgata
gaacacccagagctggaagagtttctgaaaaaggaaaaatacgatgtcgttgagctgaga
accgacgaaccggagaaatttctgttctccgatcagagaaattctttcgacttaggttct
cttgtggacgctcacagtttcgcggtggttgtttctgagaaaaaactcataccagatctt
tatcggaagattggcaaagatgcggtcgtttactacacaagcatggatgtggaaaagaaa
ataaaggcaatcagcttgatggagagcggttctgctcgaaaagcgatcatcacaagcaac
accgatgggcttccgacccacataaaaggcgatatcttcttttacgacttcccactcagc
atttacgaaatagtggatcttttgagaagaaaatcggtggttaacctctgctactcttcc
tccgacattgaaaagcgtcgatacgagctcaacaagctgtttccggatcgtgaaaagcta
aaagaaatagcgatcacagcgatgaatctgaaagacaaagaaaaactggagaagattttg
gagagcgagtacgatctgagcagtgccactttgagaaagatttatttggaccttctggaa
gaatccgggttcaacttcgatagatggagtttttcggaagatgaaaggataccttggaga
ttgcttgagagagagctcgaaatagcccagttcgaaaggacggtttccgttctttcaaag
gatctgaagtggatattcaactttttcaaggatacggtggtaaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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