KEGG   Tatumella ptyseos: NCTC11468_01235
Entry
NCTC11468_01235   CDS       T05493                                 
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
tpty  Tatumella ptyseos
Pathway
tpty03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tpty00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    NCTC11468_01235 (alkA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tpty03000]
    NCTC11468_01235 (alkA)
   03400 DNA repair and recombination proteins [BR:tpty03400]
    NCTC11468_01235 (alkA)
Enzymes [BR:tpty01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     NCTC11468_01235 (alkA)
Transcription factors [BR:tpty03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    NCTC11468_01235 (alkA)
DNA repair and recombination proteins [BR:tpty03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     NCTC11468_01235 (alkA)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC HhH-GPD HTH_23 RecR_HhH HTH_29 HTH_28 PAC4
Other DBs
NCBI-ProteinID: SQK74016
UniProt: A0A2X5NLR2
Position
1:complement(1120199..1121671)
AA seq 490 aa
MNDEESAYQAMVSRDRRFDGLFYVAVRTTGIYCRPVCPARKPLRKNCHFFRYAEQAEKAG
YRPCLRCRPELAPGHAPIDQAASLCQQFIDAIESGLLDSGSSLPEIARRFSLSERQFRRI
LHQQLGISPQELRQSRRLKLARQLLTETRLPVTSIAFTSGFGSIRQFNSAFLTHYHLAPS
AFRKSLPALPDPQQHQTEKVRLSYRPPFAWHALLRFLAGRGIKDVEWIDGEYYLRTLAIG
QCRGWIRVGDDPRQHCLRVEFSHSLTPVLPVLLQRLRQLFDLSARPDQIADHLSRDPLLA
PLVLQSPGLRVPGCFEPFELAVRAILGQQVTVAAATTLSKRLAARFGQPVVTPFPELSRL
APTAEDFIGATTDDIGSLGIVGSRINAILALADATRHGLFRELQNEPQQRGPQRLTELPG
IGPWTAQYIAMRAFSLTDAFPKEDIALRKALGGLTPRAAEQRSLIWRPWRSYAVMLLWQA
EENKKPAAKL
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgaacgatgaagagagtgcttatcaggcgatggtcagccgtgacaggcgttttgacggc
cttttttatgtcgccgtgcgtacgaccggtatttactgccgaccggtttgtccggcacgt
aaacccttacgtaaaaattgccatttttttcgctatgcggaacaggccgaaaaagccggc
taccggccctgcctgagatgccggccggaacttgcccctggccacgcgcccatagaccag
gccgcgtctctgtgccagcaattcatcgacgctattgagtccggtctgctggatagcggg
agctctctccccgaaatagccagacgcttttcgctcagtgaacgtcagttcaggcgtatt
ctgcatcagcaactggggatcagtccgcaggagttacgccagagccggcggctgaaactt
gcccggcaactactgaccgagacccggctgccggtgacgtctatcgcatttaccagtggt
ttcggcagtatccgccagtttaattccgcgtttctcacccattaccatctggccccgtca
gccttcaggaaaagtctgcctgccctgccggatccacagcagcatcagacagaaaaagtc
cggttatcttatcgcccgcctttcgcctggcacgccctgctccgttttctcgccgggcgc
ggtattaaagacgttgagtggatagacggtgaatattacctgcgcaccctggctattggt
cagtgccgggggtggatccgcgtgggagatgatccccggcaacattgtctgcgggtagag
ttcagccactcgctgaccccggtgttaccggtgttgttacaacggttacggcaacttttt
gatttgagtgcgaggcctgatcagatagccgatcatctgtcccgggatcctctgctggct
ccgttagtgctgcaaagccccggcctgcgggtaccaggctgctttgagccttttgaactg
gcggtcagggctatcctcgggcagcaagtcaccgtcgcggcagcgacaacgctgagtaaa
cggctggcggccaggttcggacagccggtggtcacccccttccctgagctgagccgcctt
gcgccgacagcggaggattttatcggggcgaccacggacgatatcggctctctggggatt
gtggggagccgtatcaatgcgattctggcgctggcggacgccacccggcacggcctgttc
agagaactgcaaaacgagcctcagcaaaggggaccgcagagactgactgaattacccggc
attggcccctggacagcacaatatattgcaatgcgggccttttcattgacggatgctttc
cctaaagaagacatagcactgcgtaaagccctcggcggactgacgccccgtgctgcagaa
caacgctcgctgatctggcgtccctggcggagttatgccgtcatgctgttatggcaggcg
gaggaaaataagaaaccggcggcaaagctgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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