KEGG   Turneriella parva: Turpa_1051
Entry
Turpa_1051        CDS       T02157                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
tpx  Turneriella parva
Pathway
tpx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Turpa_1051
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpx03019]
    Turpa_1051
   03009 Ribosome biogenesis [BR:tpx03009]
    Turpa_1051
Enzymes [BR:tpx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Turpa_1051
Messenger RNA biogenesis [BR:tpx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Turpa_1051
Ribosome biogenesis [BR:tpx03009]
 Prokaryotic type
  rRNA helicases
   Turpa_1051
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_C_2 CMS1 Flavi_DEAD
Other DBs
NCBI-ProteinID: AFM11700
UniProt: I4B343
Position
complement(1055753..1057174)
AA seq 473 aa
MKSFYELGLSPALVQAITDMGFREASPIQEKAIPILLEGHDLIGQAQTGTGKTAAFAIPV
IEKITSAKELQAMVLCPTRELAMQVAAEFKKLLKYKKDILVATVYGGQQIGTQFRDLKLK
PQIVVGTPGRVMDHMRRKTIKMNTVKFFVLDEADEMLAQGFREDIEHILLDAPKERQTVL
FSATMSKEILAITSQFLNNPQRADVLAGQSNKPKIEQFFLLVPEKNRVEATIRLMDFYDF
KSALIFSNMRSQVDSLTQQFNERGMTAEGIHGDLNQNQRDKVMGKLRSGQARLLVATDVA
GRGIDISHIEAVFNFDLPRDVEDYIHRIGRTGRAGKSGRSFSFVRPTELNKLKRLEKLHS
IRILPHDVPAAEALQKKKVSALLGEIGEVTKRAKLAQYLEYVQDLTNDEVSAEEVAAAAI
KMLLEKDNKNYDTKTQFISAQDEMKKAKSDNHRPGNYPPRSGKKFYKNKRRKG
NT seq 1422 nt   +upstreamnt  +downstreamnt
gtgaagagtttctacgaattagggttatcgcctgcacttgtgcaggcgataacagacatg
gggtttcgcgaggcgtcgccgatacaagagaaggccataccgattctgctcgaaggccac
gacctcatcgggcaggcgcagaccggcacaggcaaaactgcggcattcgcgattccggtg
atcgaaaaaatcacgtcagcaaaagagcttcaggcaatggtgctttgccccacgcgcgaa
cttgcaatgcaggttgccgccgaattcaagaaacttctgaaatataagaaggatatcttg
gttgccacagtctatggcggtcagcaaatcggtacgcagtttcgcgatctaaagctgaag
cctcagatcgtcgtcggcacacccggccgtgtgatggaccacatgcgccgcaagaccatc
aaaatgaacacggtgaagttcttcgtgcttgatgaagccgacgaaatgctcgcgcagggc
tttcgcgaagatatcgaacatattcttttagatgctcccaaagaacggcagacggtgctc
ttttcagcgaccatgtcgaaagagattctcgcaatcacttcgcagtttctgaacaacccg
cagcgcgcagacgtgctcgccgggcaaagcaacaagccgaagatcgagcagtttttcttg
ctggttcccgaaaagaaccgtgtcgaagccaccattcgcctaatggatttttacgatttc
aaatcggcgctcatctttagcaatatgcgctcgcaggtcgattcactgacgcagcaattc
aacgagcgcggtatgaccgcagaaggcattcacggcgacctcaaccagaaccagcgcgat
aaggttatgggtaaactgcgaagcgggcaggcgcgcctgctcgtggcgaccgacgttgcc
ggccgcggcatcgatatcagccatatcgaagcggtctttaacttcgacctgccgcgcgac
gtcgaagattatattcaccgcatcggccgcaccggccgggccggcaaaagcgggcgcagt
ttttcattcgtacgcccgaccgagctgaacaagctcaagcgcctcgaaaagctgcatagc
attcgaattctgccgcacgacgtgcccgccgcagaggcgctgcagaaaaagaaggtctct
gccttgctgggtgaaatcggcgaggtgacaaaacgcgcaaaactcgcgcagtaccttgaa
tacgtgcaagacctgacgaacgatgaggtttcggcagaagaggtcgcggcagcagcgatc
aagatgttgctcgaaaaagacaataagaactatgacaccaagacgcagtttatctctgca
caagacgagatgaaaaaagcgaaaagcgacaaccaccgccctggaaactatccacccagg
tcgggaaagaagttctataagaataagcgccgcaaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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