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Database: UniProt/TrEMBL
Entry: B3QGJ0_RHOPT
LinkDB: B3QGJ0_RHOPT
Original site: B3QGJ0_RHOPT 
ID   B3QGJ0_RHOPT            Unreviewed;       914 AA.
AC   B3QGJ0;
DT   02-SEP-2008, integrated into UniProtKB/TrEMBL.
DT   02-SEP-2008, sequence version 1.
DT   20-JUN-2018, entry version 57.
DE   SubName: Full=DNA ligase D {ECO:0000313|EMBL:ACF02667.1};
GN   OrderedLocusNames=Rpal_4171 {ECO:0000313|EMBL:ACF02667.1};
OS   Rhodopseudomonas palustris (strain TIE-1).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Rhodopseudomonas.
OX   NCBI_TaxID=395960 {ECO:0000313|EMBL:ACF02667.1, ECO:0000313|Proteomes:UP000001725};
RN   [1] {ECO:0000313|EMBL:ACF02667.1, ECO:0000313|Proteomes:UP000001725}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=TIE-1 {ECO:0000313|EMBL:ACF02667.1,
RC   ECO:0000313|Proteomes:UP000001725};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E.,
RA   Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L.,
RA   Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA   Mikhailova N., Emerson D., Newman D.K., Roden E., Richardson P.;
RT   "Complete sequence of Rhodopseudomonas palustris TIE-1.";
RL   Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP001096; ACF02667.1; -; Genomic_DNA.
DR   RefSeq; WP_012497070.1; NC_011004.1.
DR   ProteinModelPortal; B3QGJ0; -.
DR   EnsemblBacteria; ACF02667; ACF02667; Rpal_4171.
DR   KEGG; rpt:Rpal_4171; -.
DR   HOGENOM; HOG000222509; -.
DR   KO; K01971; -.
DR   OMA; AMMVEDH; -.
DR   OrthoDB; POG091H0AZ9; -.
DR   BioCyc; RPAL395960:RPAL_RS20635-MONOMER; -.
DR   Proteomes; UP000001725; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000001725};
KW   Ligase {ECO:0000313|EMBL:ACF02667.1}.
FT   DOMAIN      372    458       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   914 AA;  99721 MW;  1836579649F310E3 CRC64;
     MASNKLSIYR KKRDFEQTAE PRGDAKVAPS KQRRFVIQKH DATRLHYDLR LEYGGVFKSW
     AVTKGPSLDP NDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVQLWDRGY WECDDPERGF
     KTGDLKFTLH GEKLHGSWVL VRMRHDRSGG KRTNWLLIKH RDDDAREGGA NTVLDDDRSV
     ASGRAMETIA EGKGKAPKPF MLRKAAAKVT ADAVWDSNTG LAADKRAETG AAKKVAKSKP
     KTSAKAKAAK SAKPASRSKL AAQGQRAAMP DFVPPQLCTS VERPPGGEGW GHEIKFDGYR
     MQLRVEHGEA RLLTRKGLDW TAKFSAIADE AASLPDSIID TEVVALDSHG QPDFAALQAA
     LSDGHTENLI CFAFDLLYVD GEDLRGLPLA ERKARLAALL KAARGRRKEG LIRYVEHFDT
     GGDAILQSAC KLSLEGIVSK KLDAAYRSGR SDGWTKAKCR AGHEVVIGGW KTTNGKFRSL
     LVGVHRGDVL AYVGIVGTGF GQDVVKRILP ELKAHKADTS PFSGANAPKK TRELHWATPD
     LVAEIEFAGF TGAGMVRQAS FKGLRADKPA EEVEAEEPQR VEVAEPALKR RTAKASKSGK
     PAAKRAAPRR ADAARSEVMG VAISKPDKEL WPASEIGAAI TKRDLADYFA EVGDWLIPHI
     KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIGLAKVSGD RKPYVQIDRV EGLIAAAQIG
     GVELHPWNCA PNRYDVPGRL VFDLDPAPEV GFDEVITAAK EMKLRLETLG LATFCKTTGG
     KGLHVVVPLK PDDGIDWKAA KTFAQTVCAQ MAEDSPEQYL LNMSKQKRIG KIFLDYLRND
     RMSTAVAVLS PRARTGATVS MPLTWSQVKA GLDPKRYTIK SVPALMKRSK AWADYDDAAA
     PLKAAIKTLT SGKT
//
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