GenomeNet

Database: UniProt/TrEMBL
Entry: F4DU16_PSEMN
LinkDB: F4DU16_PSEMN
Original site: F4DU16_PSEMN 
ID   F4DU16_PSEMN            Unreviewed;       842 AA.
AC   F4DU16;
DT   28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT   28-JUN-2011, sequence version 1.
DT   20-JUN-2018, entry version 39.
DE   SubName: Full=ATP-dependent DNA ligase {ECO:0000313|EMBL:AEB58444.1};
GN   OrderedLocusNames=MDS_2413 {ECO:0000313|EMBL:AEB58444.1};
OS   Pseudomonas mendocina (strain NK-01).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
OC   Pseudomonadaceae; Pseudomonas.
OX   NCBI_TaxID=1001585 {ECO:0000313|EMBL:AEB58444.1, ECO:0000313|Proteomes:UP000008306};
RN   [1] {ECO:0000313|EMBL:AEB58444.1, ECO:0000313|Proteomes:UP000008306}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NK-01 {ECO:0000313|EMBL:AEB58444.1,
RC   ECO:0000313|Proteomes:UP000008306};
RX   PubMed=21551299; DOI=10.1128/JB.05068-11;
RA   Guo W., Wang Y., Song C., Yang C., Li Q., Li B., Su W., Sun X.,
RA   Song D., Yang X., Wang S.;
RT   "Complete genome of Pseudomonas mendocina NK-01, which synthesizes
RT   medium-chain-length polyhydroxyalkanoates and alginate
RT   oligosaccharides.";
RL   J. Bacteriol. 193:3413-3414(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002620; AEB58444.1; -; Genomic_DNA.
DR   RefSeq; WP_013715533.1; NC_015410.1.
DR   ProteinModelPortal; F4DU16; -.
DR   STRING; 1001585.MDS_2413; -.
DR   EnsemblBacteria; AEB58444; AEB58444; MDS_2413.
DR   KEGG; pmk:MDS_2413; -.
DR   eggNOG; ENOG4105DQE; Bacteria.
DR   eggNOG; COG1793; LUCA.
DR   eggNOG; COG3285; LUCA.
DR   KO; K01971; -.
DR   OMA; AMMVEDH; -.
DR   BioCyc; PMEN1001585:MDS_RS12175-MONOMER; -.
DR   Proteomes; UP000008306; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   TIGRFAMs; TIGR02777; LigD_PE_dom; 1.
DR   TIGRFAMs; TIGR02778; ligD_pol; 1.
DR   TIGRFAMs; TIGR02779; NHEJ_ligase_lig; 1.
DR   TIGRFAMs; TIGR02776; NHEJ_ligase_prk; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000008306};
KW   Ligase {ECO:0000313|EMBL:AEB58444.1}.
FT   DOMAIN      316    399       DNA_LIGASE_A3. {ECO:0000259|PROSITE:
FT                                PS50160}.
SQ   SEQUENCE   842 AA;  93804 MW;  C078C9F75CC53B10 CRC64;
     MARAQSEYNR KRNFEQTSEP REQPRKRRSK AGALRFVVQK HDARRLHYDF RLELDGTLKS
     WAVPKGPSLD PTQKRLAVHV EDHPLDYASF EGSIAEGNYG AGDVIVWDHG IWQPQGDPAG
     AYQAGKLKFT LVGEKLSGDW TLVRTRLRGS GDKEQWLLIK ERDDIARPSD EYDIVEAQPQ
     SVISGALVGG PSKEAKRKES TKPAKSRKAQ TEFPDSLAPQ LATLAERPPE GDWLYEVKFD
     GYRILARMRG DEVRLLTRNG HDWTERLPQQ ATALAKLGLS DSWLDGEVVA LNEQGLPDFQ
     QLQNAFDIGR SHDLIYYLFD APFLNGEDMR EVPLETRRGK LKTALGSTRR SPLRFSEAFT
     AHHRDIVESA CAMSLEGVIG KRSGSLYVSR RSADWIKLKC RLRQEFVIVG YTKPQGSRSG
     FGALLLAVNE AGGLRYAGRV GTGFGEASLK ALHEQLRKLG RDESPLERKL TAALARGVSW
     VEPQLVGEVE FAEWTREGIV RQASFIALRS DKPTAQIVRE HPRAPGAAAK KQTKKAESSC
     KSSAKPVVAG VPISNPQRVI DPESGTTKLQ LAQFYADIAE WLLPYLRKRP VSLVRAPDGV
     EGEQFFQKHA ERLAIPNIKH LDPKLDPGHA RLMEIDSVPA LVGAAQMGCI EFHRWGATSD
     RIETPDHFVL DLDPDPALPW RSMLEATRLT LSVLDELGLQ AFLKTSGGKG MHIIVPLARH
     AGWDTVKGFA KALAQFMARQ LPERFTATSG PKNRVGKIFI DYLRNGRGAS TVSAYSVRAR
     PGLPVSVPIA RDELDGLRSA QQWTVANLQR RLDGLRQDPW AGYANRQRLT RAMWDRLGAE
     AP
//
DBGET integrated database retrieval system