KEGG   Talaromyces rugulosus: TRUGW13939_02247
Entry
TRUGW13939_02247  CDS       T06879                                 
Name
(RefSeq) uncharacterized protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
trg  Talaromyces rugulosus
Pathway
trg03020  RNA polymerase
trg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TRUGW13939_02247
  09124 Replication and repair
   03420 Nucleotide excision repair
    TRUGW13939_02247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:trg03021]
    TRUGW13939_02247
   03019 Messenger RNA biogenesis [BR:trg03019]
    TRUGW13939_02247
   03400 DNA repair and recombination proteins [BR:trg03400]
    TRUGW13939_02247
Transcription machinery [BR:trg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     TRUGW13939_02247
Messenger RNA biogenesis [BR:trg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRUGW13939_02247
DNA repair and recombination proteins [BR:trg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TRUGW13939_02247
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 55989756
NCBI-ProteinID: XP_035341334
Position
I:complement(join(6567569..6567823,6567885..6568133))
AA seq 167 aa
MFFLKEETKLVTLHPSFFGPNVKEFLIRLLNEEEEGRCTGDHFVICVMDMVDIGEGRIMP
GSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLSVFIARKNIPSDIKWEP
GTVPPQYTDHAEQVIERGTSLRLKILGVKPDVSAINAIGTIKEDYLG
NT seq 504 nt   +upstreamnt  +downstreamnt
atgttcttcctcaaggaggagacgaaactcgtgaccctacatccctccttctttggtccc
aatgtcaaggaattcctgattaggctactgaatgaggaagaagaggggagatgcacgggc
gaccactttgtcatctgtgttatggacatggtggatattggtgagggacggattatgccc
ggcagtggccatgcagaatacacgatcaagtatcgcgccatcatctggaagccttttaga
ggagagacggtggacgccatcgttacctctgtcaaacccacgggaattttcacactcgct
ggcccactgtccgtgttcatcgctcgcaagaacatcccgtctgatataaaatgggaacct
ggcacggtacccccgcagtacacagatcatgccgagcaggtgattgagcgaggaacgagt
cttcgcttgaaaatacttggtgtgaagcccgacgtctcggcgataaatgccattggaacg
atcaaagaagactacctggggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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