KEGG   Thermococcus radiotolerans: A3L10_07920
Entry
A3L10_07920       CDS       T05177                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
trl  Thermococcus radiotolerans
Pathway
trl03030  DNA replication
trl03410  Base excision repair
trl03420  Nucleotide excision repair
trl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L10_07920
   03410 Base excision repair
    A3L10_07920
   03420 Nucleotide excision repair
    A3L10_07920
   03430 Mismatch repair
    A3L10_07920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trl03032]
    A3L10_07920
   03400 DNA repair and recombination proteins [BR:trl03400]
    A3L10_07920
Enzymes [BR:trl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A3L10_07920
    6.5.1.6  DNA ligase (ATP or NAD+)
     A3L10_07920
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A3L10_07920
DNA replication proteins [BR:trl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    A3L10_07920
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     A3L10_07920
DNA repair and recombination proteins [BR:trl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A3L10_07920
   NER (nucleotide excision repair)
    Other NER factors
     A3L10_07920
   MMR (mismatch excision repair)
    Other MMR factors
     A3L10_07920
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Tcp10_C TPR_1
Other DBs
NCBI-ProteinID: ASJ15056
UniProt: A0A2Z2NBJ6
Position
complement(1427419..1429098)
AA seq 559 aa
MKYAELADLYRRLEKTTLKTLKTKFVSDFLKKAPDELLDIIPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEREIENSVRDTGDLGESVALALEKKKQKSFFSQPLTIKRVYNTF
VKIAEASGQGSQDRKLKYLANLFMDAQPEEGKYLARTVLGTMRTGVAEGLMRDAIASAFG
VKAELVERAYMLTSDFGYVARVAKLKGNEGLSKVRIQVGKPIRPMLAQNAANVKEALVEM
GGKAAFEIKYDGARVQVHKDGDRVVIYSRRLENVTKSIPEVVDAVLESVKPEKAIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGDGMIDTPFSERRKK
LEEIISQNERIRLAEQLVTTSADEAEEFYQRALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGQFVPVGKVGSGFTDEDLAEFT
KMLKPLIVREEGKYVEIEPKVVIQVTYQEIQKSPKYESGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaaatacgccgaactggccgacctctacaggcgcctggaaaaaacgaccctcaagacc
ctcaagaccaaattcgtctccgattttctcaagaaggcacccgatgaactccttgatata
atcccctacctcatcctcggaaaggtcttccctgactgggacgagagagagcttggggtc
ggcgagaagctcctcataaaggccgtttccatggctaccggcgttcccgagcgggagata
gagaactccgtgagggacaccggcgacctcggtgagagcgttgccctggccctggagaag
aaaaaacagaagagcttcttctctcagccgctgaccataaagcgcgtttacaacaccttc
gtgaagatagccgaggccagcgggcagggaagtcaggacaggaagctgaagtacctcgcc
aacctcttcatggacgcccagccggaggagggcaagtatctcgccaggacggttctcgga
accatgcgcaccggcgttgcggagggactcatgagggacgccatagcgagcgcctttgga
gtcaaggccgagctcgtcgagagggcttacatgctcacgagcgacttcggctacgtcgcg
agggtggccaagctcaagggcaacgagggcctctcaaaggtcagaatccaggtgggcaag
cccataaggccgatgctcgcccagaacgcggccaacgtgaaggaagctttggtagagatg
ggcggaaaggcggcgttcgagataaagtacgatggagcacgcgttcaggttcacaaagac
ggcgacagggtcgttatatactcccgcaggctggagaacgtgacgaagtccatcccggag
gttgttgatgccgtcctggagagcgtaaagcccgagaaggccatcgtggagggtgaactc
gttgccgtcggcgagggcgggaagcccaggcccttccagtacgtgctgaggcgcttcagg
agaaagtacaacatcgaggagatgatagagaagatccccctcgagctgaacctcttcgac
gtcctctacgttgacggcgatgggatgatagacacgcccttctccgagcgcaggaagaag
ctggaggagataatctcccagaacgagaggataaggctggctgaacagctggtaaccacc
agcgccgacgaggctgaggagttctatcagcgcgcccttgagctcggccacgagggcctg
atggcgaagcgcctggattcggtttacgagcccggaaacaggggcaagaagtggctcaag
ataaagcccacgatggaggacctcgacctcgtcataatcggcgccgaatggggagaggga
aggcgcgcacacctcctaggctccttcctggttgcggccttcgacccgcacagcggccag
ttcgtcccggttggaaaggtcgggagcggcttcaccgatgaagacctggccgagttcacc
aagatgctcaagcccctcatagtccgcgaggagggcaagtacgtcgagatagagccgaag
gtcgttatccaggtcacctaccaggagatacagaagagcccgaagtacgagagcggcttt
gcccttcgcttcccgcgctacgtcgctttgagggaggacaagagtcccgaggaggcggac
acgatcgagcgcatagcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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